Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioscorea_20rotundata_20[genbank_20GCA_5F002240015.1_202017-07-28] 21 sequences; 456,674,974 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq8 118 6e-25 seq14 93.3 2e-17 >seq8 Length=28021425 Score = 118 bits (130), Expect = 6e-25 Identities = 97/117 (83%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| ||| |||||| ||||| || |||||| || Sbjct 18884998 GAACCCAAAGACTTTGATTTCTCATAAAGTGCCGGCGGAGTCCTAAAASCAACATCCGCC 18884939 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| || | |||||| ||||||||||||||||||| || Sbjct 18884938 GATCCCTGGTCGGCATCGTTTATGG-TGAGACTAGGACGGTATCTGATCGTCTTTGA 18884883 Score = 102 bits (112), Expect = 5e-20 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||| ||||||||||||||||||| ||||||| || ||||| || |||| | || Sbjct 18898542 GAAACCAAAGACTTTGATTTCTCATAAGGTGTCGGCGGAGTCCTAAAAGCAACACCCGCC 18898483 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATC 109 ||||||| |||||||| || || |||| |||||| |||||||||||||| Sbjct 18898482 GATCCCTGGTCGGCATCGTATATGGTTGAGACTAGGACGGTATCTGATC 18898434 Score = 87.8 bits (96), Expect = 1e-15 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 3 ACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGA 62 |||||||||||||||||||| |||||||||| ||||| || |||||| ||| Sbjct 21110126 ACCCAAAGACTTTGATTTCTMATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGTCGA 21110185 Query 63 TCCCTAGTCGGCATAGTTTACGGTTAAGACTACGA 97 ||||| |||||||| ||||| |||| |||||| || Sbjct 21110186 TCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGA 21110220 >seq14 Length=15713101 Score = 93.3 bits (102), Expect = 2e-17 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||||||||||||||||| ||||||||||| |||| | || | ||||| | Sbjct 10750589 AACCCAAAGACTTTGATTTCTCATAAGGTGCCGACGGAGTAATAAAAACAACATTTTCTA 10750530 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 |||||| || ||||| |||| |||| ||||| |||| ||||| |||| Sbjct 10750529 ATCCCTGGTTGGCATCATTTATGGTTGAGACTTGGACGATATCTAATCG 10750481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278399945190