Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioscorea_20rotundata_20[genbank_20GCA_5F002240015.1_202017-07-28] 21 sequences; 456,674,974 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq8 223 6e-56 seq6 140 6e-31 seq14 98.7 2e-18 >seq8 Length=28021425 Score = 223 bits (246), Expect = 6e-56 Identities = 198/245 (81%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| |||| | |||||||||||||| Sbjct 18884639 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCAACGCTCTGGATACATTAGCATGGG 18884698 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| |||||| | ||| | ||||||||||| Sbjct 18884699 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCRGAGTAATGATTAA 18884757 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| ||||||||| | ||||| || ||||||| |||||||||||||||||| | Sbjct 18884758 GAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGRTGAAATTCTTGGATTTATGAA 18884817 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| ||||||||||| || ||||||||||||||||| |||| ||||||||||| Sbjct 18884818 AGACGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTKATCA-AGAACGAAAGTT 18884876 Query 314 AGGGG 318 |||| Sbjct 18884877 GGGGG 18884881 Score = 206 bits (228), Expect = 5e-51 Identities = 194/245 (79%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| |||| |||||| |||||||| || |||| | |||||||||||||| Sbjct 21110464 TTACTTTGAAGAAATWAGAGTGCTCAAAGCAAGCMMACGCTCTGGATACATTAGCATGGG 21110405 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||||| Sbjct 21110404 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAA 21110346 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 | ||| |||||||| | ||||| || |||||||||||||||||||||||||| | Sbjct 21110345 GAAGGACAGTCGGGGACATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 21110286 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||| ||| ||||||||||| || ||||||||||||||||| |||| ||| ||||||| Sbjct 21110285 AGAYGAACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCA-AGAATGAAAGTT 21110227 Query 314 AGGGG 318 |||| Sbjct 21110226 GGGGG 21110222 >seq6 Length=32866201 Score = 140 bits (154), Expect = 6e-31 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| | |||||| | |||| | |||||||||||| Sbjct 3358427 TTACTTTGAAGAAATTAGAGTGCTGAAAGCAAGMMCACGCTCTGGATACATTAGCATTTG 3358368 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | ||| ||||| |||||| | ||| || ||||||| ||| Sbjct 3358367 ATAACATCATAGGAT-TCTGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGACTAA 3358309 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| ||||||||| | ||||| || |||||| ||||||||||||||||||| | Sbjct 3358308 GAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGADGTGAAATTCTTGGATTTATGAA 3358249 Query 254 AGACTAACTACTG 266 |||| ||| |||| Sbjct 3358248 AGACGAACCACTG 3358236 >seq14 Length=15713101 Score = 98.7 bits (108), Expect = 2e-18 Identities = 83/101 (82%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 |||| ||| | || ||||||||||||||||||||| |||| ||| ||||||||||| | Sbjct 10750371 TATTTAATAGCCAAAGGTGAAATTCTTGGATTTATGAAAGATGAACCACTGCGAAAGCAT 10750430 Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGG 316 | ||||||||||||| ||| |||| ||| |||| ||||| Sbjct 10750431 TTGCCAAGGATGTTTTTATTGATCA-AGAATGAAAATTAGG 10750470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915199807808