Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioscorea_20rotundata_20[genbank_20GCA_5F002240015.1_202017-07-28] 21 sequences; 456,674,974 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq9 183 8e-44 seq3 163 7e-38 seq17 104 6e-20 seq6 104 6e-20 seq8 82.4 2e-13 seq2 75.2 3e-11 seq15 73.4 1e-10 >seq9 Length=23324680 Score = 183 bits (202), Expect = 8e-44 Identities = 288/413 (70%), Gaps = 26/413 (6%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||||| || ||||||||||| | |||| | ||||||| || || Sbjct 13748099 TACTCCGCATCTTCACAGAGAATTCAATTTCACCGGGTCTATGTCGGAGACAACGGGGCA 13748040 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||| Sbjct 13748039 GCCGTTACACCATTCATGCAGGTCGCTACTTATGTGACAAGGAATTTCGCTACCTTAGGA 13747980 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | ||| ||||| ||||| |||||||||||||| || | ||| ||| | || Sbjct 13747979 CATTTAGAGTTACTGCCGCTGTTTACCGGGGCTTTCATTCAAAGC------TTATCACAC 13747926 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||| ||| ||| |||| || |||||| || || | | Sbjct 13747925 TTCTCCTTCCGACCTTCCAGCACTGGGTAGGTGTCAGACTCTATACATCGTGTTACCACT 13747866 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| |||||||||||||||| |||| | |||||| | | | | | | Sbjct 13747865 TAGCAGAGTCCTGTGTTTTTAATAAATAGTCTCTATTCCCTGGTCTATGCCGCTTTCCTA 13747806 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | |||| || |||| |||||||||||||||| || | | Sbjct 13747805 ATCAAGAGGAG--AG-----CACC------------CCTTCTCCCGAAGTTATGGGGTCA 13747765 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTC-AAGCGCCTTGGTATTCTCTAC 418 ||||||| |||||| || | |||||||| | ||||| | |||| |||||| Sbjct 13747764 TTTTGCCGAGTTCCGTCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTAC 13747712 Score = 174 bits (192), Expect = 4e-41 Identities = 213/286 (74%), Gaps = 10/286 (3%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | ||||||| || | || |||||||||| | ||| | ||||||||| || Sbjct 6167440 TACTCCGCATCTTAACGGAGAATTCAATTTCATCGGGTCCATGTCAGAGACAGCGGGGCA 6167499 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTAC--CCGACAAGGAATTTCGCTACCTTAG 124 ||||||| ||||||||||||||| | | ||| |||||||||||||| ||||||||| Sbjct 6167500 GTCGTTACACCATTCGTGCAGGTC--ACCATACATGCGACAAGGAATTTCACTACCTTAG 6167557 Query 125 GACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTA 184 || |||| ||||| ||||||||||| ||||||||| || | ||||| | | || Sbjct 6167558 GAAAGTTAGAGTTACTGCCGCCGTTTATCGGGGCTTCCATTCAAAGCTTATC-ACACTTA 6167616 Query 185 ACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGT 244 || || ||||||| ||| |||||||| |||| || |||||| || || | Sbjct 6167617 --TCCTTC---CGACCTTCCAGCAACGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 6167671 Query 245 GTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGT 290 || ||||||| |||||||||||||| |||||||| | ||||||| Sbjct 6167672 CTTAGCAGAGTCCTGTGTTTTTAATAGACAGTCGCTACTGCCTGGT 6167717 Score = 174 bits (192), Expect = 4e-41 Identities = 286/413 (69%), Gaps = 26/413 (6%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | ||||||||||| || ||||||||||| | ||| | |||| || || || Sbjct 8402010 TACTCCGCATCTTCACACAGAATTCAATTTCACCGGGTCCATGTCGGAGGCAACGGGGCA 8402069 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||| ||||||||| ||||| ||||||||||||| |||||||||||| Sbjct 8402070 GTCGTTACACCATTCATGCAGGTCGCTACTTATGCGACAAGGAATTTTGCTACCTTAGGA 8402129 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 |||| ||||| ||||||||||||| || ||| || | ||| ||| | || Sbjct 8402130 TAGTTAGAGTTACTGCCGCCGTTTACCCGGCCTTTCATTCAAAGC------TTATCACAC 8402183 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||| ||| ||| |||| || |||||| || || | | Sbjct 8402184 TTCTCCTTCCGACCTTCCAGCACTGGGTAGGTGTCAGACTCTATACATCGTGTTACCACT 8402243 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| |||||||||||||||| |||||| |||||| | | | | | | Sbjct 8402244 TAGCAGAGTCCTGTGTTTTTAATAAATAGTCGCTATTCCCTGGTCTGTGCCGCTTTCCTA 8402303 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | |||| || |||| ||||||||||||||||| | | | Sbjct 8402304 ATCAAGAGGAG--AG-----CACC------------CCTTCTCCCGAAGTTACAGGGTCA 8402344 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTC-AAGCGCCTTGGTATTCTCTAC 418 ||||||| |||||| || | |||||||| | ||||| | |||| |||||| Sbjct 8402345 TTTTGCCGAGTTCCGTCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTAC 8402397 Score = 168 bits (186), Expect = 2e-39 Identities = 204/273 (75%), Gaps = 10/273 (4%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGA-GACAGCGCCGC 65 ||| | ||||||||||| || ||||||||||| ||||| | ||||| || |||| || Sbjct 12658502 TACTCCGCATCTTCACAAAGAATTCAATTTCACCGAGTC-CATGTGGAAGATAGCGGGGC 12658444 Query 66 CATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 125 ||||||| |||||||||||||||| | ||| |||||||||||||| |||||||||| Sbjct 12658443 AATCGTTATACCATTCGTGCAGGTCGCTAGTTATGCGACAAGGAATTTCACTACCTTAGG 12658384 Query 126 ACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGA-TCAAGAGCTTCGCGTTAGCTA 184 || |||| ||| | ||||| ||||||| ||||||| | ||||| || ||| | Sbjct 12658383 ACAGTTAGAGTTCCTGCCGCTGTTTACCAGGGCTTCCATTCAAG-GC------TTATCAC 12658331 Query 185 ACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGT 244 || | | | ||||||| | || ||||||| |||| || |||||| | || | Sbjct 12658330 ACTTCTCCTACCGACCTTCCAGTACTGGGCAGGTGTCAGACTCTATACATTGTGTTACCA 12658271 Query 245 GTTTGCAGAGTGCTGTGTTTTTAATAAACAGTC 277 || |||||| ||||||||| |||||| |||| Sbjct 12658270 CTTACCAGAGTCCTGTGTTTTAAATAAATAGTC 12658238 Score = 165 bits (182), Expect = 2e-38 Identities = 284/413 (69%), Gaps = 26/413 (6%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||| || Sbjct 13815417 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCAGAGACAGCAGGGCA 13815476 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 || |||| ||||||||| || || ||||| ||| |||||||||||||||||||||| Sbjct 13815477 GTCATTACACCATTCGTGTAGCTCACTACTTATGCGATAAGGAATTTCGCTACCTTAGGA 13815536 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| |||||||||||||||||||| || | | | ||| | || Sbjct 13815537 CAGTTAGAGTTACTACCGCCGTTTACCGGGGCTTCTATTCAAATC------TTATCACAC 13815590 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | | ||||||| |||| ||||||| |||| || ||| || || || | Sbjct 13815591 TTCTCCTTCTGACCTTCCAGCACAGGGCAGGTGTCAGACTCTACACATCGTGTTACCACA 13815650 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| || ||||||||||||||| |||| | |||||| | | | | | | Sbjct 13815651 TAGCAGAGTCCTATGTTTTTAATAAACAATCGCTACCCCCTGGTCTGTGCTGCTTTCCTA 13815710 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | |||| || |||| ||||||||||||||||||| | | Sbjct 13815711 ATCAAGAGGAG--AG-----CACC------------CCTTCTCCCGAAGTTACGGGGTCA 13815751 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTC-TCAAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | |||||| | | || | | |||| |||||| Sbjct 13815752 TTTTGCCGAGTTCCTTCGACATGGTTCTCTTGACGCAGCCTAGTATACTCTAC 13815804 Score = 73.4 bits (80), Expect = 1e-10 Identities = 77/104 (74%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 || |||| | |||||||||| || || ||||||| ||| ||| ||||||| | Sbjct 14159287 GCAGATAGTCCRCATCTTCACAAACATGTCTATTTCACCGAGCCTCTCTCTGAGACAGTG 14159346 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACA 105 || ||| ||||| | ||| ||| |||| |||||||||||||| Sbjct 14159347 CCCAGATCATTACGYCTTTCRTGCGGGTCRGAACTTACCCGACA 14159390 >seq3 Length=19547260 Score = 163 bits (180), Expect = 7e-38 Identities = 196/265 (74%), Gaps = 6/265 (2%) Strand=Plus/Plus Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74 || |||| || || ||||||||||| ||| | |||||| | | || |||| Sbjct 8012250 ATTTTCATAGAGAATTCAATTTCACCAGGTCCATGTCAGAGACAATGGGGTAGTCATTAC 8012309 Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATT 134 ||||||||| |||||| ||||| |||||||||||||| |||| ||| ||| |||| Sbjct 8012310 ACCATTCGTGTAGGTCGCTACTTATGCGACAAGGAATTTCACTACATTAAGACAGTTAGA 8012369 Query 135 GTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAA 194 ||||| |||||| |||||||||||||| || | ||||| | | || || || Sbjct 8012370 GTTACTGCCGCCATTTACCGGGGCTTCCATTCAAAGCTT---ATCACACTACTCCTTC-- 8012424 Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 | ||||||| |||||||| ||| |||| || |||||| || || | || |||||| Sbjct 8012425 -TGACCTTCCAGCACCGGGTAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAG 8012483 Query 255 TGCTGTGTTTTTAATAAACAGTCGC 279 | ||||||||||||||||||||||| Sbjct 8012484 TCCTGTGTTTTTAATAAACAGTCGC 8012508 >seq17 Length=20585887 Score = 104 bits (114), Expect = 6e-20 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| |||| || ||| ||| || Sbjct 1518950 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTTTCCGAGATAGTGCCTAGATCATT 1518891 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 | || | ||| ||||| ||||||| ||||||||||||||||||||||| |||| ||| Sbjct 1518890 AAACCTAT--TGCGGGTCGAAACTTACTCGACAAGGAATTTCGCTACCTTATGACCATTA 1518833 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTT 160 | |||||| ||| ||| || ||||| Sbjct 1518832 TAGTTACGCCCGTYGTTCACAAAGGCTT 1518805 >seq6 Length=32866201 Score = 104 bits (114), Expect = 6e-20 Identities = 63/67 (94%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 87 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCC 146 |||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 22783517 GGTCGGAACTTACCTGACAAGGAATTTCGCTACCTTAGGACTGTTATAGTTACGGCCGCC 22783576 Query 147 GTTTACC 153 ||| ||| Sbjct 22783577 GTTCACC 22783583 >seq8 Length=28021425 Score = 82.4 bits (90), Expect = 2e-13 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || |||||||||||| ||||| |||||| ||| |||| | ||| || ||||| ||| Sbjct 39906 TTGACCTTCCGGCACTGGGCACGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAG 39847 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGAC 299 |||||||||| ||||||||||| |||||||| || |||| Sbjct 39846 ACCTGTGTTTTTGGTAAACAGTCGCCTAGGCCTGGTCACTGCGAC 39802 Score = 75.2 bits (82), Expect = 3e-11 Identities = 73/94 (78%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 ||||| | |||| || || ||||||| ||| ||| ||||||| ||| ||||| Sbjct 28001972 TGCATGTAGACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCTAGATCGT 28002031 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACA 105 | |||| ||||||| ||||||||||||||||||| Sbjct 28002032 TGCGCCTTTCGTGCGGGTCGGAACTTACCCGACA 28002065 >seq2 Length=33969142 Score = 75.2 bits (82), Expect = 3e-11 Identities = 72/93 (77%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 33677795 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 33677854 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACA 105 ||||| ||||||| | | | |||||||| |||| Sbjct 33677855 ACGCCTTTCGTGCGGTTYGAAACTTACCTGACA 33677887 >seq15 Length=10474557 Score = 73.4 bits (80), Expect = 1e-10 Identities = 98/136 (72%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 29 TTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGG 88 ||||||||||| ||| | ||||||| | || ||| |||| |||||||||| | Sbjct 4102523 TTCAATTTCACCAGGTCCATGTCAGAGACAGGGG-GCAATCATTACACCATTCGTGCRTG 4102581 Query 89 TCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGT 148 || ||||| ||| ||||||||| ||||| ||| ||| |||| ||| | || | | Sbjct 4102582 TCACTACTTATGCGATAAGGAATTTTGCTACTTTAAGACAGTTAGATTTATTGTCGTCAT 4102641 Query 149 TTACCGGGGCTTCGAT 164 |||||| || ||| || Sbjct 4102642 TTACCGAGGTTTCAAT 4102657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260799735232