Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioscorea_20rotundata_20[genbank_20GCA_5F002240015.1_202017-07-28] 21 sequences; 456,674,974 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq8 271 1e-70 seq6 255 9e-66 seq14 129 9e-28 seq16 87.8 3e-15 >seq8 Length=28021425 Score = 271 bits (300), Expect = 1e-70 Identities = 215/259 (83%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | | ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 18885384 ACTCGTTGAATACATYAGTGTAGYGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 18885325 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||| | | | || | | | | |||||||||||||||| ||| Sbjct 18885324 CCTGTTATTGCCTCAAACTTTCGTGGCCTAAACGGCCACAGTCCCTCTAAGAAGCTGGCC 18885265 Query 122 ACCAACCA--TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | | || |||| |||||||| | ||||||||||||||||| ||||| Sbjct 18885264 GCGGAGGGATTCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTATCRGAATT 18885205 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 18885204 AACCAGACAAATCGCTCCACCAACTAGGAACGGCCATGCAACACCACCCATAGAATCAAG 18885145 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 18885144 AAAGAGCTCTCAGTCTGTC 18885126 >seq6 Length=32866201 Score = 255 bits (282), Expect = 9e-66 Identities = 212/259 (82%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 3390918 ACTCGTTGAATACATCAGTGTAGCGCGCGTACGGCCCAGAACATCTAAGGACATCACAGA 3390977 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||| |||||||||||||| | | || | | | | |||||||||||||||| ||| Sbjct 3390978 CCTGTTAATGCCTCAAACTTCCGTGGCCTAAACGGCCAYAGTCCCTCTAAGAAGCTGGCC 3391037 Query 122 ACCAACCA--TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | | || | |||| |||||||| | ||||||||||| ||||||||| | Sbjct 3391038 ACAGAGGGATTCCTCTGTATAGCTAGTTAGCAGGCTGAGGTCTCGTTCATTATCGGAAAT 3391097 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||||||||| |||||||||||| |||| |||||| ||||||||||| ||| Sbjct 3391098 AACCAGACAAATCACTCCAACAACTAAGAACGACCATACACCACGACCCATAGAATAAAG 3391157 Query 240 AAAGAGCTATCAATCTGTC 258 ||| |||| ||| ||| || Sbjct 3391158 AAAAAGCTCTCAGTCTATC 3391176 Score = 122 bits (134), Expect = 1e-25 Identities = 91/108 (84%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||| |||||||| |||||||||||||||||| |||||| |||| |||||||||| Sbjct 3391483 TCAGTGTAGTGCGCGTGCAGCCCAGAACATCTAAGGGYATCACAAACCTATTATTGCCTC 3391424 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCAC 123 ||| |||| | | | | | | |||||||||||||||||| ||||| Sbjct 3391423 AAAATTCCGTGGCCKAAACGACCATAGTCCCTCTAAGAAGCTTGCCAC 3391376 >seq14 Length=15713101 Score = 129 bits (142), Expect = 9e-28 Identities = 100/118 (85%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||||| | || ||| ||||||| | |||||||||||||||||| |||||| Sbjct 10750834 GCTAGTTAGCAGGGTGAGTTCTAGTTCGTTGTTAGAATTAACCAGACAAATCGCTCCAC- 10750776 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | ||||||||| |||||||||| ||||||||||| |||||| |||| ||||||||| Sbjct 10750775 ATCTAAGAACGATCATGCACCACTACCCATAGAATTAAGAAAAAGCTCCCAATCTGTC 10750718 >seq16 Length=23371965 Score = 87.8 bits (96), Expect = 3e-15 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 148 AGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAG 207 ||||| | |||||||||||||||| |||||||| |||||||||| |||||||||||||| Sbjct 16936303 AGCAGTATGAGGTCTCGTTCGTTATTGGAATTAAGCAGACAAATCGCTCCACCAACTAAG 16936244 Query 208 AACGGC 213 || ||| Sbjct 16936243 AATGGC 16936238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796799837901