Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioscorea_20rotundata_20[genbank_20GCA_5F002240015.1_202017-07-28] 21 sequences; 456,674,974 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq8 376 4e-102 seq6 369 6e-100 seq1 87.8 3e-15 >seq8 Length=28021425 Score = 376 bits (416), Expect = 4e-102 Identities = 260/293 (89%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| | | ||| ||| ||||||||||||||||||||||||||||| Sbjct 21123417 TACTAGGTTGAATTACTTTGGCGGCT-CGGCCATCAGTAGGGTAAAACTAACCTGTCTCA 21123359 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||| ||||||||||| |||| |||||||||||||||||| ||| || Sbjct 21123358 CGACGGTCTAAACCTAGCTCACGTTCAATATTGGTGGGTGAACAATCCAACACTTGGTGA 21123299 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 21123298 ATTCTGCTTCACAATGATAGGAGGAGCCGACATCGAAGGATCAAAAAGCAACGTCACTAT 21123239 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 21123238 GAATGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 21123179 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||| ||| || |||||||||||||||||||| ||||||||||| |||||| Sbjct 21123178 CAAATCCCGAAGGGCTAAAGGATCGATAGGCCACGCTTTCATGGTTCGTATTC 21123126 Score = 129 bits (142), Expect = 1e-27 Identities = 85/94 (90%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 200 GCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAA 259 |||||||||||||||||||||||||||| |||||||||| |||||| ||| || ||||| Sbjct 18893671 GCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATCGCGAAGGGCTAAA 18893612 Query 260 GGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||||||| |||||| |||| |||||| Sbjct 18893611 GGATCGATAGGCCACGCTTTCACGGTTCGTATTC 18893578 >seq6 Length=32866201 Score = 369 bits (408), Expect = 6e-100 Identities = 257/293 (88%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | || | |||||||||||||||||| ||||| ||||||| Sbjct 3336385 TACTAGGTTGAATTACTATAGCGGTG-YGGTCATCAGTAGGGTAAATCTAACTTGTCTCA 3336443 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||||||||||||| ||||||||| |||||||| ||| || Sbjct 3336444 CAACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAAGAATCCAACACTTGGTGA 3336503 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 3336504 ATTCTGCTTCACAATGATAGGAAGAGCTGACATCGAATGATCAAAAAGCAACGTCGCTAT 3336563 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||||||||| ||||||||||| ||||||||||||| || |||||||||| | Sbjct 3336564 GAACGCTTGGCTGCCACATGCCAGTTATCCMTGTGGTAACTTTTTTGACACCTCTAGCTT 3336623 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||| ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 3336624 CAAATCCCGAAGGGCTAAAGGATCGATAGGCCACGCTTTCAYGGTTCGTATTC 3336676 >seq1 Length=31431123 Score = 87.8 bits (96), Expect = 3e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 226 TGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGT 285 || |||||||||| |||||| ||| || ||||||||||||||||||||||||||| ||| Sbjct 28093767 TGACACCTCTAGCTTCAAATCCCGAAGGGCTAAAGGATCGATAGGCCACACTTTCACGGT 28093708 Query 286 TTGTATTC 293 | |||||| Sbjct 28093707 TCGTATTC 28093700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854399820576