Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioscorea_20rotundata_20[genbank_20GCA_5F002240015.1_202017-07-28] 21 sequences; 456,674,974 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq9 86.0 7e-15 seq6 75.2 1e-11 >seq9 Length=23324680 Score = 86.0 bits (94), Expect = 7e-15 Identities = 106/149 (71%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 ||||||| |||| || |||| || |||||||||| || | | ||||||||| | | Sbjct 13815394 GGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGG 13815453 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 || | ||||||| ||||||||||||| || || ||||| ||| Sbjct 13815454 TCCATGTCAGAGACAGCAGGGCAGTCATTACACCATTCGTGTAGCTCACTACTTATGCGA 13815513 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||| |||| Sbjct 13815514 TAAGGAATTTCGCTACCTTAGGACAGTTA 13815542 Score = 80.6 bits (88), Expect = 3e-13 Identities = 92/128 (72%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || |||||||||| | | | ||||||||| ||| || | ||| || Sbjct 12658504 GGTACTCCGCATCTTCACAAAGAATTCAATTTCACCGAGTCCATGTGGAAGATAGCGGGG 12658445 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 || ||||||||||||||||| | ||| |||||||||||||| ||||||||| Sbjct 12658444 CAATCGTTATACCATTCGTGCAGGTCGCTAGTTATGCGACAAGGAATTTCACTACCTTAG 12658385 Query 166 GACCGTTA 173 ||| |||| Sbjct 12658384 GACAGTTA 12658377 Score = 80.6 bits (88), Expect = 3e-13 Identities = 103/146 (71%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||| ||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 13748124 CGGTGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACAGAGAATTCAATTTCACCG 13748065 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | | | |||||| |||||||||| ||||||||| ||||| Sbjct 13748064 GGTCTATGTCGGAGACAACGGGGCAGCCGTTACACCATTCATGCAGGTCGCTACTTATGT 13748005 Query 143 GACAAGGAATTTCGCTACCTTAGGAC 168 |||||||||||||||||||||||||| Sbjct 13748004 GACAAGGAATTTCGCTACCTTAGGAC 13747979 Score = 75.2 bits (82), Expect = 1e-11 Identities = 91/128 (71%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || |||||||||| | | | ||||||||| | | || | ||| || Sbjct 8402008 GGTACTCCGCATCTTCACACAGAATTCAATTTCACCGGGTCCATGTCGGAGGCAACGGGG 8402067 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 |||||||||| ||||||||| ||||| ||||||||||||| |||||||||| Sbjct 8402068 CAGTCGTTACACCATTCATGCAGGTCGCTACTTATGCGACAAGGAATTTTGCTACCTTAG 8402127 Query 166 GACCGTTA 173 || |||| Sbjct 8402128 GATAGTTA 8402135 >seq6 Length=32866201 Score = 75.2 bits (82), Expect = 1e-11 Identities = 44/46 (96%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 128 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 22783517 GGTCGGAACTTACCTGACAAGGAATTTCGCTACCTTAGGACTGTTA 22783562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547199888679