Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioscorea_20rotundata_20[genbank_20GCA_5F002240015.1_202017-07-28] 21 sequences; 456,674,974 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq9 138 3e-30 seq3 122 2e-25 >seq9 Length=23324680 Score = 138 bits (152), Expect = 3e-30 Identities = 146/191 (76%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 213 CTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTG 269 |||||| | || |||| ||||| | ||||| |||| || ||| || ||| |||| Sbjct 14214216 CTTCGGTGAATCACTTGAGCCCTGAGACATTTTCGGTGCCACGGAG---CTAGACTAGTG 14214272 Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC 329 ||||||||||| |||| ||||||||||||||| ||||| | |||||||||||| ||| Sbjct 14214273 AGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCTAAGCCCATCTCCTGGTTGTCATCGC 14214332 Query 330 AACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTG 389 ||| |||||| ||||| ||| ||||||| ||||||| |||||||| ||| Sbjct 14214333 CCGATCACTTCCTTTTCCACTAAGTTCTTGCTTAGGGACCTTAGCCTATGATCTGAGCTA 14214392 Query 390 TTTCCCTCTCG 400 ||||||||||| Sbjct 14214393 TTTCCCTCTCG 14214403 Score = 132 bits (146), Expect = 1e-28 Identities = 144/190 (76%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| ||||| |||| || ||| || ||||||| Sbjct 9721902 GCTTCGGTGAATCACTTGAGCCCTAAGACATTTTCGGTGCCATGGAG---CTAGACCAGT 9721846 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| |||||| |||||||||||||| |||||||||||||| || Sbjct 9721845 GAGCTATTACGCTTTCTTCAAAGGATTGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 9721786 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| | |||| | ||| ||| ||||||| ||||||| | ||||| |||| Sbjct 9721785 CTCGATCACTTTCTTTTCTACTAAGTTCTTGCTTAGGGACCTTAGCATACGATCTTGGCT 9721726 Query 389 GTTTCCCTCT 398 |||||||||| Sbjct 9721725 GTTTCCCTCT 9721716 Score = 129 bits (142), Expect = 1e-27 Identities = 143/190 (75%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| ||| | |||| || ||| || ||||||| Sbjct 13143449 GCTTCGGTGAATCACTTGAGCCCTAAGACAATTTCGGTGCCATGGAG---CTAGACCAGT 13143505 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| |||||| |||||||||||||| |||||||||||||| | Sbjct 13143506 GAGCTATTACGCTTTCTTCAAAGGATTGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCA 13143565 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| | |||| | ||| ||| |||||||| ||||||| | |||||||||| Sbjct 13143566 CTCGAYCACTTTCTTTTCTACTAAGTTCTTACTTAGGGACCTTAGCGTACGATCTGGGCT 13143625 Query 389 GTTTCCCTCT 398 ||||| |||| Sbjct 13143626 GTTTCACTCT 13143635 Score = 127 bits (140), Expect = 5e-27 Identities = 143/190 (75%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| ||| | |||| || ||| || ||||||| Sbjct 9326729 GCTTCGGTGAATCACTTGAGCCCTAAGACAATTTCGGTGCCATGGAG---CTAGACCAGT 9326673 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 || ||||||||| |||| |||||| |||||||||||||| |||||||||||||| || Sbjct 9326672 GAACTATTACGCTTTCTTCAAAGGATTGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 9326613 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| | |||| | ||| ||| ||||||| ||||||| | |||||||||| Sbjct 9326612 CTCGATCACTTTCTTTTCTACTAAGTTCTTGCTTAGGGACCTTAGCGTACGATCTGGGCT 9326553 Query 389 GTTTCCCTCT 398 |||||||||| Sbjct 9326552 GTTTCCCTCT 9326543 Score = 127 bits (140), Expect = 5e-27 Identities = 143/190 (75%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| ||||| |||| || ||| || ||||||| Sbjct 9521491 GCTTCGGGGAATCACTTGAGCCCTAAGACATTTTCGGTGCCATGGAG---CTAGACCAGT 9521435 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||| | |||| |||||| |||||||||||||| |||||||||||||| || Sbjct 9521434 GAGCTATTACACTTTCTTCAAAGGATTGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 9521375 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| | |||| ||||| ||| |||||| ||||||| | |||||||| | Sbjct 9521374 CTCGATCACTTTCTTTTCCACTAAGTTCTTGGTTAGGGACCTTAGCGTACGATCTGGGGT 9521315 Query 389 GTTTCCCTCT 398 |||||||||| Sbjct 9521314 GTTTCCCTCT 9521305 Score = 127 bits (140), Expect = 5e-27 Identities = 143/190 (75%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| || |||| ||||| ||||| |||| | ||| || ||||||| Sbjct 12956195 GCTTCGGTAAATCACTTGAGCCCTAAGACATTTTCGGTACCATGGAG---CTAGACCAGT 12956251 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| ||||| |||||| |||||||||||||| || |||||||| || ||| Sbjct 12956252 GAGCTATTACGCTTTCTTTAAAGGATTGCTGCTTCCAAGCCCACATCCTGGTTATCAACG 12956311 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| | |||| ||||| ||| |||||| ||||||| | |||||||||| Sbjct 12956312 CCCGATCACTTTCTTTTCCACTAAGTTCTTGGTTAGGGACCTTAGCGTACGATCTGGGCT 12956371 Query 389 GTTTCCCTCT 398 |||||||||| Sbjct 12956372 GTTTCCCTCT 12956381 Score = 125 bits (138), Expect = 2e-26 Identities = 143/191 (75%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 213 CTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTG 269 |||||| | || |||| ||||| | ||||| | || || ||| || ||| |||| Sbjct 13816842 CTTCGGTGAATTACTTGAGCCCTGAGACATTTTTGGTGCCATGGAG---CTAGACAAGTG 13816898 Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC 329 |||||||| || |||| ||||||||||||||||||| | ||||||| ||||| ||| Sbjct 13816899 AGCTATTATGCTTTCTTCAAAGGATGGCTGCTTCCAAGACCACCTCCTTATTGTCATCGC 13816958 Query 330 AACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTG 389 ||| |||||| ||||| ||| | ||||||| ||||| | | |||||||||| Sbjct 13816959 TCGATCACTTCCTTTTCCACTAAGTTATTGCTTAGGGACCTTAACATACGATCTGGGCTA 13817018 Query 390 TTTCCCTCTCG 400 ||||||||||| Sbjct 13817019 TTTCCCTCTCG 13817029 Score = 123 bits (136), Expect = 6e-26 Identities = 142/190 (75%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 |||| || | || |||| ||||| ||||| |||| || ||| || ||||||| Sbjct 9084353 GCTTTGGTGAATCACTTGAGCCCTAAGACATTTTCGGTGCCATGGAG---CTAGACCAGT 9084297 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| |||||| ||| ||||||| || |||||||||||||| || Sbjct 9084296 GAGCTATTACGCTTTCTTCAAAGGATTGCTACTTCCAATCCCACCTCCTGGTTGTCATCG 9084237 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| | |||| ||||| ||| ||||||| ||||||| | |||||||| | Sbjct 9084236 CTCGATCACTTTCTTTTCCACTAAGTTCTTGCTTAGGGACCTTAGCGTACGATCTGGGTT 9084177 Query 389 GTTTCCCTCT 398 |||||||||| Sbjct 9084176 GTTTCCCTCT 9084167 Score = 114 bits (126), Expect = 3e-23 Identities = 140/190 (74%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| ||||| |||| || ||| || || |||| Sbjct 13497740 GCTTCGGTGAATCACTTGAGCCCTAAGACATTTTCGGTGCCATGGAG---CTAGATCAGT 13497796 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| |||||| ||| |||||||||| |||||||||||||| || Sbjct 13497797 GAGCTATTACGCTTTCTTCAAAGGATTGCTACTTCCAAGCCCACCTCCTGGTTGTCATCG 13497856 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | || | ||| ||||| ||| ||||||| |||||| | |||||||| | Sbjct 13497857 CTCAATCATTTTTTTTTCCACTAAGTTCTTGCTTAGGGAACTTAGCGTACGATCTGGGTT 13497916 Query 389 GTTTCCCTCT 398 |||||||||| Sbjct 13497917 GTTTCCCTCT 13497926 Score = 89.7 bits (98), Expect = 1e-15 Identities = 108/146 (74%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 |||| || | || |||| ||||| | ||||| | || || ||| || ||||||| Sbjct 12657174 GCTTTGGTGAATCACTTGAGCCCTGAGACATTTTTGGTGCCATGGAG---CTAGACCAGT 12657118 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||| | |||| ||||||||||||||||||||| || |||||||||| || Sbjct 12657117 GAGCTATTACACTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACATCCTGGTTGTTATCG 12657058 Query 329 CAACTCCACATCCTTTCCCACTGAGT 354 | || |||||| ||||| ||| Sbjct 12657057 CTCGATCAATTCCTTTTCCACTAAGT 12657032 >seq3 Length=19547260 Score = 122 bits (134), Expect = 2e-25 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || ||| |||||||||||| || |||| ||||||||||||||||||||| ||||||| Sbjct 8013565 CTAGACTAGTGAGCTATTATGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTA 8013624 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 |||||| | || ||| |||||| ||||| ||| ||||||| ||||||| || Sbjct 8013625 GTTGTCAAAGCTCGATCACTTCCTTTTCCACTAAGTTCTTGCTTAGGGACCTTAGCATAT 8013684 Query 379 GATCTGGGCTGTTTCCCTCTCG 400 |||||| | | ||||||||||| Sbjct 8013685 GATCTGAGTTATTTCCCTCTCG 8013706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177599752704