Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioscorea_20rotundata_20[genbank_20GCA_5F002240015.1_202017-07-28] 21 sequences; 456,674,974 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq17 116 3e-24 seq16 100 2e-19 seq5 89.7 4e-16 seq1 87.8 1e-15 seq9 80.6 2e-13 >seq17 Length=20585887 Score = 116 bits (128), Expect = 3e-24 Identities = 124/161 (77%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| || ||||||| ||| | ||| | ||| ||| ||||||| ||||| | Sbjct 7390982 CGAGTTGCAGCCTGCAATCCGAACTGAGGAT-CTGTTTTTGGAGTTAGCTCACCCTCATG 7391040 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | ||| |||| ||| ||||||||| ||||||| |||| |||||||| | Sbjct 7391041 GGATCGCGACCCTTTGTCCCGCCCATTGTATCACGTGTGTCGCCCAGGGCATAAGGGGTA 7391100 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||||| ||||||||| ||| || |||| Sbjct 7391101 TGATGACTTGACGTCATCCTCACCTTCCTTCGGCTTATCAC 7391141 >seq16 Length=23371965 Score = 100 bits (110), Expect = 2e-19 Identities = 119/160 (74%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 17269225 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 17269283 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || ||| | |||||||| ||||||| ||| |||||||||||||| Sbjct 17269284 CCTTGTTTCCTATTGTCATTGCCATTGTAGCACGTGTGTGGCCTAGCCCATAAGGGCCAT 17269343 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||| ||||||||||||||||||| || | |||| Sbjct 17269344 GCGGACTTGATGTCATCCCCACCTTCCTCCAGTATCTCAC 17269383 >seq5 Length=32871075 Score = 89.7 bits (98), Expect = 4e-16 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| |||| ||||||||||||||| ||||||||| ||||||||| Sbjct 29424026 CCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGCGGACTTGACATCATCCCCA 29424085 Query 143 CCTTCCTCC 151 ||||||||| Sbjct 29424086 CCTTCCTCC 29424094 >seq1 Length=31431123 Score = 87.8 bits (96), Expect = 1e-15 Identities = 115/158 (73%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||| | ||| | Sbjct 7617657 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTTCGCCTTACAA 7617599 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | ||| || ||| ||||||| || ||||||| |||| ||||||||||||| Sbjct 7617598 CCTTGCGTCCTATTGTCATTACCATTATAGCACGTGTGTGGCCCAGGCCATAAGGGCCAT 7617539 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTC 159 | ||||||| ||| |||| |||||||||| || |||| Sbjct 7617538 GCGGACTTGTCGTAATCCATACCTTCCTCCAGTATGTC 7617501 >seq9 Length=23324680 Score = 80.6 bits (88), Expect = 2e-13 Identities = 108/149 (72%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| Sbjct 8719375 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTATAA 8719317 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || || | | | |||||||| ||||||| |||| |||||||||||||| Sbjct 8719316 CCTTGCTTCCTATTATCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 8719257 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTC 150 |||| |||| ||||||||||||||||| Sbjct 8719256 ACGGACATGACATCATCCCCACCTTCCTC 8719228 Score = 78.8 bits (86), Expect = 8e-13 Identities = 110/153 (72%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| ||||| ||| | ||| | | Sbjct 6204827 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTC-CGGATTCGCTTCGCCTTACAG 6204769 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | ||| || ||| ||||||| || ||||||| |||| || |||||||| || Sbjct 6204768 CCTTGCGTCCTATTGTCATTACCATTATAGCACGTGTGTGGCCCAGCCTATAAGGGCAAT 6204709 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGT 154 | ||||||| || |||| |||||||||| || Sbjct 6204708 GCGGACTTGTTGTAATCCATACCTTCCTCCAGT 6204676 Score = 73.4 bits (80), Expect = 3e-11 Identities = 113/160 (71%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| || ||||| ||| | | ||||| |||| ||||| ||| | | Sbjct 8887182 CGAGTTGCAGAGAACTATCCGAACTGAGGCAATCTTTC-CAGATTCGCTCCGCCTTACAG 8887240 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || || || | |||||||| ||||||| |||| || |||| |||||| Sbjct 8887241 CCTTGCTTCCTATTGCCATTGCCATTGTAGCACGTGTGTGGCCCAGCCTATAAAGGCCAT 8887300 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | || ||||| ||||||||| |||||||| || | |||| Sbjct 8887301 GCAGATTTGACATCATCCCCAACTTCCTCCAGTATCTCAC 8887340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415999915370