Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioscorea_20rotundata_20[genbank_20GCA_5F002240015.1_202017-07-28] 21 sequences; 456,674,974 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq17 208 1e-51 seq9 206 4e-51 seq2 158 2e-36 seq18 149 1e-33 seq3 147 3e-33 seq13 77.0 5e-12 >seq17 Length=20585887 Score = 208 bits (230), Expect = 1e-51 Identities = 168/204 (82%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131 |||| | ||||||| |||||||||| |||| |||||||| |||||||||| ||| || Sbjct 7385951 GGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCTTCTCGTACTAGGGAAAGG 7386010 Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGA 191 ||||||||| || |||||| | | |||| ||| ||||||||||| ||||||||||| Sbjct 7386011 TCCTCTCAATGCTCTAACGCCCGCACCAGATATGGATCGAACTGTCTCACGACGTTCTGA 7386070 Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 ||||||||| ||| || |||||||||||||||| |||||||||||| || |||| ||||| Sbjct 7386071 ACCCAGCTCACGTACCGCTTTAATGGGCGAACAACCCAACCCTTGGAACATACTACAGCC 7386130 Query 252 CCAGGATGAGACGAGCCGACATCG 275 | ||| | || |||||||||| | Sbjct 7386131 CTAGGTGGCGAAGAGCCGACATYG 7386154 >seq9 Length=23324680 Score = 206 bits (228), Expect = 4e-51 Identities = 209/277 (75%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| ||||| ||| |||| ||| | |||| Sbjct 14158553 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCTGCTCCGCACTTGGCTACMCAGCA 14158612 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | | || | ||||||| ||| |||||| ||| || |||||||||| |||| Sbjct 14158613 TTTACCGTGGRCACGATAACTGGTACACTAGAGGTACATCCTTCMCGGTCCTCTCKTACT 14158672 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| | |||||| |||||| || Sbjct 14158673 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGRACCGAAMTGTCTCACG 14158732 Query 183 ACGTTCTGAACCCAGCTCGC-----GTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGG 237 || |||| |||||||||| || ||||||||||||||||||| |||||||||||| Sbjct 14158733 ACRTTCTRAACCCAGCTCAYGTACTGTACCTCTTTAATGGGCGAACAACCCAACCCTTGG 14158792 Query 238 GACCTACTTCAGCCCCAGGATGAGACGAGCCGACATC 274 || || | ||||||||| | || ||||||||||| Sbjct 14158793 AACATAATACAGCCCCAGCTGGYGAAGAGCCGACATC 14158829 Score = 167 bits (184), Expect = 4e-39 Identities = 178/233 (76%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 ||||||||| ||| | ||| ||||| ||||| ||| ||||| ||||| ||| | Sbjct 12659035 AACTTAGCTGCCCGGTGCTGCTATTGGCCTAACAACCGGTACACCATAGGTTGAGCCAAC 12658976 Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTT-CCTACGCCCACGACGG---AT 162 || ||||||||||||||||| ||||||| || | | ||| | || |||| || Sbjct 12658975 CCAGTCCTCTCGTACTAAGGTTGGCTCCTCGCAGTTCTACCTTTAACAACAACGGTAGAT 12658916 Query 163 AGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAA 222 ||| ||| || |||||| ||||||||| |||||| ||| ||| || |||| || |||||| Sbjct 12658915 AGGAACCAAAATGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCATCGGCGAA 12658856 Query 223 CAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || |||||||||||| | ||||| | |||||||| || ||| |||||||| Sbjct 12658855 CAACCGAACCCTTGGGACTTTCTTCAACGCCAGGATGTGATGAGTCGACATCG 12658803 Score = 165 bits (182), Expect = 1e-38 Identities = 139/171 (81%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 105 TCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAG 164 ||||||||||||||||||| ||| || ||||||||| || || | | | ||||| Sbjct 20294458 TCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACACACGCACTGGATAT 20294517 Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224 ||||||||||||||| |||||||||||||||||||| || |||||||||||||||| Sbjct 20294518 GGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCATGTATTGCTTTAATGGGCGAACA 20294577 Query 225 GCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||| || |||| || ||||||| | || ||||| |||||| Sbjct 20294578 ACCCAACCCTTGGAACATACTACACCCCCAGGTGGCGAAGAGCCAACATCG 20294628 Score = 154 bits (170), Expect = 2e-35 Identities = 191/264 (72%), Gaps = 9/264 (3%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 |||||||| |||||| |||||| ||| |||| ||| | | | | | |||| Sbjct 8762122 CTTAGATGTTTTCAGCAGTTATCCGCTCCGCACTTGGCTG----GGTTTACCATGGGCAC 8762177 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 | ||||||| ||| | |||| |||| ||||||||||||||||||| ||| | || || Sbjct 8762178 GATAACTGGTACACTAAAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAACATCATC 8762237 Query 137 TCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCA 196 |||| || | | || | || ||| ||||||||| |||| || |||||||||||| Sbjct 8762238 TCAATGCTCTAATGSCCGCACCGAATATKGACCGAACTSTCTCATGAAGTTCTGAACCCA 8762297 Query 197 GCTCGC-----GTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 |||| | || || |||||||||| ||| ||||||||| |||| || |||| || || Sbjct 8762298 GCTCACGTAATGTACCACTTTAATGGGTGAAAAGCCCAACCMTTGGAACATACTACATCC 8762357 Query 252 CCAGGATGAGACGAGCCGACATCG 275 ||| | || ||||| |||||| Sbjct 8762358 CCACATAGTGAAGAGCCCACATCG 8762381 Score = 154 bits (170), Expect = 2e-35 Identities = 174/233 (75%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 ||||||||| || || ||| || ||| ||||| ||| ||||| ||||| ||| | Sbjct 13269700 AACTTAGCTGTCCGGCGTTGCTATTTGCATAACAACCGGTACACCATAGGTTGACCCAAC 13269641 Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT----ACGCCCACGACGGAT 162 || |||||||||||||| || ||||||| || | ||| || || | | ||| Sbjct 13269640 CCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCTTTCACACCAATGGTAGAT 13269581 Query 163 AGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAA 222 ||| | |||||||||| |||| |||| |||||| ||| ||| || |||| || |||||| Sbjct 13269580 AGGAATTGAACTGTCTCACGACCTTCTAAACCCAACTCACGTACCACTTTCATCGGCGAA 13269521 Query 223 CAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || |||||||||||||| ||||| |||| |||| || || |||||||| Sbjct 13269520 CAACCGAACCCTTGGGACCTTCTTCAACCCCGAGATGTGATAAGTCGACATCG 13269468 Score = 150 bits (166), Expect = 3e-34 Identities = 185/252 (73%), Gaps = 7/252 (3%) Strand=Plus/Plus Query 28 TCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTG 87 |||| |||| || | | ||||||||| ||| || ||| ||| || ||||| || Sbjct 6166736 TCAGTTCTT---CCATACCAACTTAGCTACCCGGCGCTGCTATTGCCATAACAACCAGTA 6166792 Query 88 CACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT 147 ||||| ||||| ||| ||| |||||||||||||| || |||||||| | ||| Sbjct 6166793 CACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGTTAGCTCCTCATTGTTCTCCC 6166852 Query 148 ----ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCG 203 || | | |||||| ||||||||||||| || ||||| |||||| | | || Sbjct 6166853 TTTAACAACAATAGTAGATAGGAACCGAACTGTCTCATGATGTTCTAAACCCAACACACG 6166912 Query 204 TGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGAC 263 | || |||| || || ||||| || |||||||||||||| ||||| |||||||||| || Sbjct 6166913 TACCACTTTCATCGGTGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGAT 6166972 Query 264 GAGCCGACATCG 275 ||| |||||||| Sbjct 6166973 GAGTCGACATCG 6166984 Score = 147 bits (162), Expect = 3e-33 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 ||||||||| | | | ||| |||||| |||| ||| |||| ||||| ||| | Sbjct 8338437 AACTTAGCTGCYCGGTGSTGCTATTGGCATAACAAYCGGTATACCATAGGTTGACCCAAC 8338378 Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTC-CT---ACGCCCACGACGGAT 162 || |||||||| || || || ||||||| || | || || | || | | ||| Sbjct 8338377 CCAGTCCTCTCATASTAGGGTTGGCTCCTCGCARTTCTCTCTTTARCACCAATGGTAGAT 8338318 Query 163 AGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAA 222 ||| ||| ||||||||| ||||||||| |||||| ||| ||| || |||| || | ||| Sbjct 8338317 AGGAACCAAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCATCGAYGAA 8338258 Query 223 CAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || |||||||||||||| ||||| ||| |||||| || ||| ||||||| Sbjct 8338257 CAACCGAACCCTTGGGACCTTCTTCAACCCTAGGATGTGAWGAGTTGACATCG 8338205 Score = 143 bits (158), Expect = 4e-32 Identities = 157/209 (75%), Gaps = 5/209 (2%) Strand=Plus/Plus Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131 |||| | ||||||| ||| | |||| |||| ||||||||||||||||||| ||| | Sbjct 14244157 GGCACGATAACTGGTACACTAAAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAACA 14244216 Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGA 191 || |||||| || | | || | || ||| |||||||||| |||| || ||||||| Sbjct 14244217 TCATCTCAATGCTCTAATGGCCGCACCGAATATGGACCGAACTCTCTCATGAAGTTCTGA 14244276 Query 192 ACCCAGCTCGC-----GTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTT 246 ||||||||| | || || |||||||||| ||| ||||||||| |||| || |||| Sbjct 14244277 ACCCAGCTCACGTAATGTACCACTTTAATGGGTGAAAAGCCCAACCATTGGAACATACTA 14244336 Query 247 CAGCCCCAGGATGAGACGAGCCGACATCG 275 || ||||| | || ||||| |||||| Sbjct 14244337 CATCCCCACATAGTGAAGAGCCCACATCG 14244365 >seq2 Length=33969142 Score = 158 bits (174), Expect = 2e-36 Identities = 205/280 (73%), Gaps = 11/280 (4%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||| ||||| |||||| ||||| ||| |||| ||| |||||| Sbjct 33677048 GGTGGGCTTACTACTTTGATGCTTTCAGCAGTTATCTGCTCCGCACTTGGCTACCCAGCA 33677107 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | || | | |||| || ||| | | || ||| ||| ||||||||| |||| Sbjct 33677108 TTTACCGTCGGTACGATAACTAGTACACTAAAAGTGCATCCTTCCTGGTCCTCTCTTACT 33677167 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACG-AC-GGATAGGGACCGAACTGTCTCG 180 | ||| || ||||||||| || | || ||| || ||||| ||||| |||||| || Sbjct 33677168 AGGGAAAGGTCCTCTCAATGCTCTAATGC--ACGYACTGGATATGGACCRAACTGTYTCA 33677225 Query 181 CGACGTTCTGAACCCAGCTCGCGTG-----CCTCTTTAATGGGCGAACAGCCCAACCCTT 235 || |||||||||||||||| ||| || ||||||| || |||||||||||||||| Sbjct 33677226 TGATGTTCTGAACCCAGCTCACGTATTGTACCWCTTTAATKGGTGAACAGCCCAACCCTT 33677285 Query 236 GGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || |||| ||| |||| | | || |||||||||||| Sbjct 33677286 GGAACATACTACAG-CCCAAGTGGTGAAGAGCCGACATCG 33677324 >seq18 Length=22795539 Score = 149 bits (164), Expect = 1e-33 Identities = 119/144 (83%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGA 191 ||||||||| || |||||| | |||||| ||||| ||||||||| ||||||| ||| Sbjct 5272855 TCCTCTCAATGCTCTAACGCCCTCACCGGATATGGACCAAACTGTCTCACGACGTTTTGA 5272914 Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 ||| ||||| | | || ||||||||||||||||||||||||||||| || |||| || || Sbjct 5272915 ACCAAGCTCACCTACCACTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACARCC 5272974 Query 252 CCAGGATGAGACGAGCCGACATCG 275 ||||| | || |||||||||||| Sbjct 5272975 CCAGGTGGCGAAGAGCCGACATCG 5272998 >seq3 Length=19547260 Score = 147 bits (162), Expect = 3e-33 Identities = 183/249 (73%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || | |||||| ||||| ||| | Sbjct 8011549 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGTAGTTATTGGCATAACAACCGGTAC 8011608 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAAT-TTCCT 147 |||| ||||| ||| ||| |||||||| ||||| || ||||||| || | ||||| Sbjct 8011609 ACCATAGGTTGACCCAACCCAGTCCTCTCATACTAGGGTTGGCTCCTCGCAGTTCTTCCT 8011668 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| |||||||| |||||| ||| ||| Sbjct 8011669 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCATGACGTTCTAAACCCAACTCACGT 8011728 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 | |||| || || |||| | |||||||||||| | ||||| ||||| |||| || | Sbjct 8011729 ACGACTTTCATTAGCAAACAACTGAACCCTTGGGACATTCTTCAACCCCATGATGTGATG 8011788 Query 265 AGCCGACAT 273 || | |||| Sbjct 8011789 AGTCAACAT 8011797 >seq13 Length=29719729 Score = 77.0 bits (84), Expect = 5e-12 Identities = 90/122 (74%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 83 TGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAAT 142 |||| ||||||| | |||| |||| |||||||| || ||| | | ||||||| Sbjct 1011884 TGGTACACCAGAATTGTGTCTTTCCCAGTCCTCTCAAGTTAGGGAAAAGTTCTCTCAATG 1011825 Query 143 TTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGC 202 || ||||| || ||| || ||| || |||||||| ||| ||||||||||||||| | Sbjct 1011824 CTCTAACGCCTACACCGGGTATGGATCGGACTGTCTCATGACATTCTGAACCCAGCTCAC 1011765 Query 203 GT 204 || Sbjct 1011764 GT 1011763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780799841156