Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq297 102 2e-19 seq16668 82.4 1e-13 seq247 78.8 2e-12 seq2 78.8 2e-12 >seq297 Length=119073 Score = 102 bits (112), Expect = 2e-19 Identities = 213/310 (69%), Gaps = 8/310 (3%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGA--GTGATTC 69 |||| |||||||||| | |||| ||| | || ||||| || |||| || ||||| | Sbjct 74117 GGGGAGTGAAATAGAACATGAAACCGTGAGCTCCCAAGCAGTGGGAGGAGAATGTGAT-C 74175 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||| Sbjct 74176 TCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAG 74234 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 || | ||| ||||| || ||||||||| ||| | ||||||| || || Sbjct 74235 GGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCGATT-GTCACTGCTT 74290 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | || Sbjct 74291 ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTG 74350 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||| |||||||| | |||||| | | ||||||| | | || ||||||||||| | Sbjct 74351 GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 74410 Query 310 CCAATCAAAC 319 ||| || ||| Sbjct 74411 CCACTCGAAC 74420 >seq16668 Length=9150 Score = 82.4 bits (90), Expect = 1e-13 Identities = 209/313 (67%), Gaps = 14/313 (4%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGA--GTGATTC 69 |||| ||||||||| | |||| | | | | ||||| || |||| || ||||| | Sbjct 2294 GGGGAATGAAATAGAACATGAAACAGTGAGATCCCAAGCAGTGGGAGGAGAATGTGAT-C 2236 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||| Sbjct 2235 TCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGACAGTGGCTTGGTTAAG 2177 Query 130 GG---CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTG 186 || | |||| ||||| || |||||||| ||| | ||||||| || | || Sbjct 2176 GGAACCCACAGG------AGCCGTAGCAAAAGCGAGACTTCATAGGGCGATT-GTCGTTG 2124 Query 187 GCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTG 246 ||||| |||| | |||||||| ||| || |||| ||||| ||| | | Sbjct 2123 CTTATAGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAA 2064 Query 247 ATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAA 306 |||||| || ||||| | || || | | ||||||| | | || |||||||||| Sbjct 2063 GTGGAGGTCCAAACCGACTGATATTTAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAA 2004 Query 307 AGGCCAATCAAAC 319 | | || |||||| Sbjct 2003 ATGTCACTCAAAC 1991 Score = 82.4 bits (90), Expect = 1e-13 Identities = 209/313 (67%), Gaps = 14/313 (4%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGA--GTGATTC 69 |||| ||||||||| | |||| | | | | ||||| || |||| || ||||| | Sbjct 3319 GGGGAATGAAATAGAACATGAAACAGTGAGATCCCAAGCAGTGGGAGGAGAATGTGAT-C 3261 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||| Sbjct 3260 TCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGACAGTGGCTTGGTTAAG 3202 Query 130 GG---CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTG 186 || | |||| ||||| || |||||||| ||| | ||||||| || | || Sbjct 3201 GGAACCCACAGG------AGCCGTAGCAAAAGCGAGACTTCATAGGGCGATT-GTCGTTG 3149 Query 187 GCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTG 246 ||||| |||| | |||||||| ||| || |||| ||||| ||| | | Sbjct 3148 CTTATAGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAA 3089 Query 247 ATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAA 306 |||||| || ||||| | || || | | ||||||| | | || |||||||||| Sbjct 3088 GTGGAGGTCCAAACCGACTGATATTTAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAA 3029 Query 307 AGGCCAATCAAAC 319 | | || |||||| Sbjct 3028 ATGTCACTCAAAC 3016 >seq247 Length=183695 Score = 78.8 bits (86), Expect = 2e-12 Identities = 169/248 (68%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| Sbjct 6285 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 6343 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191 | || | ||||| || ||||||||| ||| | ||||||| || || | Sbjct 6344 AACCCA-CCAG--AGCCGTAGCGAAAGCGAGTCTTCATAGGGCGATT-GTCACTGCTTAT 6399 Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251 ||| |||| | |||||||| ||| || |||| ||||| ||| | | |||| Sbjct 6400 GGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 6459 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 || |||||||| | |||||| | | ||||||| | | || ||||||||||| ||| Sbjct 6460 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 6519 Query 312 AATCAAAC 319 | || ||| Sbjct 6520 ACTCGAAC 6527 >seq2 Length=225651 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 48606 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 48665 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 48666 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 48725 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 48726 AACCAAGATCGGATATAGCTGGT 48748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972408097792