Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq11180 398 1e-108 seq8641 389 6e-106 seq11467 259 7e-67 seq15169 154 2e-35 seq16720 140 5e-31 >seq11180 Length=19481 Score = 398 bits (440), Expect = 1e-108 Identities = 245/256 (96%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 1119 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 1176 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1177 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 1236 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 1237 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 1295 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 1296 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 1355 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 1356 GCCATAGTCCCTCTAA 1371 >seq8641 Length=56469 Score = 389 bits (430), Expect = 6e-106 Identities = 235/244 (96%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 38201 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 38258 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 38259 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTTCAAAGATT 38318 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 38319 ACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 38378 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 38379 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTCGGCCTAAAC 38438 Query 240 GGCC 243 |||| Sbjct 38439 GGCC 38442 >seq11467 Length=20650 Score = 259 bits (286), Expect = 7e-67 Identities = 180/201 (90%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 44 CGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 1407 CGCTTAGTAGGAATT-CCTTGTTGAAGACCAACAATTGCAATGATCTATCCCCATTACGA 1349 Query 104 TGAAATTT-CAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATC 162 |||||||| | |||||||||||| ||||||| |||||| ||||||||| |||||||||| Sbjct 1348 TGAAATTTTCGAAGATTACCCGGGCCTGTCGACCAAGGCTATAGACTCGCTGAATACATC 1289 Query 163 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||||||| ||| ||| ||||||||||||||||| |||||||||||| | ||||||||| Sbjct 1288 AGTGTAGCACGCATGCAGCCCAGAACATCTAAGGACATCACAGACCTAT--TTGCCTCAA 1231 Query 223 ACTTCCGTGGCCTAAAAGGCC 243 |||||| |||||||| |||| Sbjct 1230 ACTTCCTCGGCCTAAACGGCC 1210 >seq15169 Length=13453 Score = 154 bits (170), Expect = 2e-35 Identities = 112/126 (89%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||| ||||||||||||| ||||| | ||||||| ||||||||||||| | Sbjct 2786 GTACAAAGGGCAGAGACGTAGTCAACGTGAGCTGG-TGACTCGTGCTTACTAGGAATA-C 2843 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 ||||||||||||||| |||||||||||||||||||||||||||| || ||| |||||| Sbjct 2844 CTCGTTGAAGACCAAAAATTGCAATGATCTATCCCCATCACGATAAATTTTTTGAAGATT 2903 Query 120 ACCCGG 125 || ||| Sbjct 2904 ACTCGG 2909 >seq16720 Length=9106 Score = 140 bits (154), Expect = 5e-31 Identities = 86/89 (97%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| Sbjct 2973 GTACAAAGGGCAGGGACGTAGTCAACGCGAGC-TGATGACTCGCGCTTACTGGGAA-TTC 2916 Query 61 CTCGTTGAAGACCAACAATTGCAATGATC 89 ||||||||||||||||||||||||||||| Sbjct 2915 CTCGTTGAAGACCAACAATTGCAATGATC 2887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751706516490