Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq8641 190 9e-46 seq57 96.9 1e-17 seq1444 91.5 6e-16 seq17 80.6 1e-12 >seq8641 Length=56469 Score = 190 bits (210), Expect = 9e-46 Identities = 218/289 (75%), Gaps = 13/289 (4%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| |||||| ||||| | Sbjct 36835 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCGCGCGAGTCGACGGGTGCGGA 36776 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCC--------GTGAGGGTGCA 514 |||||| | || || ||| ||| ||| | |||| ||| | | ||| ||| Sbjct 36775 AACCCGGAAGGCGCAAGGAAGCTGA-CGG--GCGGGAGCCCCCCCGCGAGGGGGGGCGCA 36719 Query 515 CCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCC 574 || || |||| || ||| | | || || || |||| |||| | |||| ||||||| Sbjct 36718 CCGCCGGCCGACCCCGATCTTCTGTGAAGGGTTCGAGTTGGAGCGTGCCTGTCGGGACCC 36659 Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG 634 ||||||||||||||||||||||| || ||||||||||||||||||||||||||| || Sbjct 36658 GAAAGATGGTGAACTATGCCTGAGCGAGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCG 36599 Query 635 CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 36598 AAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 36550 Score = 156 bits (172), Expect = 2e-35 Identities = 139/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || ||| ||||||| |||||||||||||||||| | || ||| ||| |||| | Sbjct 37232 GAGGCGCCGTCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTGAATTCC 37173 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || |||||||| ||| |||||||||||||| ||||||| | || ||||||||| Sbjct 37172 GTCCAAGGCTAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGA 37113 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||| ||||||||| ||| || | |||||||| | ||||||||| Sbjct 37112 AAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 37059 >seq57 Length=135213 Score = 96.9 bits (106), Expect = 1e-17 Identities = 105/138 (76%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 49 TGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAG 108 |||||||||||||||||| || || || |||||| || || |||||| | ||| || Sbjct 13672 TGTTTGGGAATGCAGCTCCAATCGGACAGTGAATTTCATCCAAGGCTAAAGACGGGCGAG 13731 Query 109 AGACCGATAGCGCACAAGTAGAGTGATCGAAAGATG-AAAAGCACTTTGGAAAGAGAGTT 167 | | |||||||| ||||||| || ||||||| |||| |||||| ||||||||| Sbjct 13732 ATATCGATAGCGAACAAGTACCACGAGGAAAAGATGAAAAATGACTTTGAAAAGAGAGTC 13791 Query 168 AAAAAGCACGTGAAATTG 185 ||| || | |||||||| Sbjct 13792 AAAGAGTGCTTGAAATTG 13809 >seq1444 Length=57038 Score = 91.5 bits (100), Expect = 6e-16 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 |||||||||||||| ||||||| | || ||||||||||||| |||||| ||||||||| Sbjct 2492 AGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGT 2551 Query 167 TAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||| || | |||||||| | ||||||||| Sbjct 2552 CAAAGAGTGCTTGAAATTGCCGGTAGGGAAGCG 2584 >seq17 Length=175674 Score = 80.6 bits (88), Expect = 1e-12 Identities = 69/84 (82%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 |||| |||||| |||| ||||||||||||||| ||||||||||||| || || | Sbjct 136889 GAGTTGGAGCATGCCTGTCAGGACCCGAAAGATGGCGAACTATGCCTGAGCGAGGCGATG 136830 Query 609 CCAGAGGAAACTCTGGTGGAGGCT 632 ||||| |||||||| ||||||||| Sbjct 136829 CCAGA-GAAACTCTAGTGGAGGCT 136807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079135865300