Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2 150 2e-34 seq297 141 1e-31 seq18544 98.7 1e-18 seq16668 89.7 7e-16 seq18140 84.2 3e-14 >seq2 Length=225651 Score = 150 bits (166), Expect = 2e-34 Identities = 182/244 (75%), Gaps = 13/244 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 50211 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 50153 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 50152 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 50095 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 50094 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 50044 Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 | || |||| | ||| |||| |||||| |||||| || ||||||||||||||| Sbjct 50043 TCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGG 49984 Query 245 GGTA 248 |||| Sbjct 49983 GGTA 49980 >seq297 Length=119073 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 75476 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 75418 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 75417 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 75371 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 75370 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 75317 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 75316 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 75257 Query 246 GTA 248 ||| Sbjct 75256 GTA 75254 >seq18544 Length=7421 Score = 98.7 bits (108), Expect = 1e-18 Identities = 88/109 (81%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCAC- 199 |||||||||||||||||||||||| ||| |||||||||| ||||||| | |||| | Sbjct 5484 GGCACCCCTTCTCCCGAAGTTACGAGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 5543 Query 200 CCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | | ||| ||||||||||||| |||||| ||||||||| |||| Sbjct 5544 CGGCGCCCCTAGGTATTCTCTACCTACCCACCTATGTCGGTTTCAGGTA 5592 >seq16668 Length=9150 Score = 89.7 bits (98), Expect = 7e-16 Identities = 167/244 (68%), Gaps = 21/244 (9%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||| ||| ||||| |||||| || |||||| | ||||| | ||| || |||| Sbjct 974 CCTTCTGACACTGGGCAAGCGTCAACCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 1032 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || || ||||| || Sbjct 1033 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTACGACCCCCT------------- 1079 Query 126 TCGTTCACCAGCAGTGGCACCCC-TTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCC 184 | || || || ||||||| ||||||||||||||| |||| ||||||| || |||| Sbjct 1080 TTGTG----AGAAG--GCACCCCCTTCTCCCGAAGTTACAGGGCTATTTTGCTGAGTTCC 1133 Query 185 TTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 || | |||| | || | ||| | ||||| ||||| ||||||||||| |||| Sbjct 1134 TTCGAGAAAGTTGTCTCGCGCCCCTAGGAATTCTTTACCTACCCACCTGTGTCAGTTTCG 1193 Query 245 GGTA 248 |||| Sbjct 1194 GGTA 1197 >seq18140 Length=7788 Score = 84.2 bits (92), Expect = 3e-14 Identities = 88/111 (79%), Gaps = 5/111 (5%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCAC- 199 ||||||||||||| | |||||||| || |||||| ||| ||||||| | |||| || Sbjct 7211 GGCACCCCTTCTCTCAAAGTTACGAGGTTATTTTGTCGAGTTCCTTAGAGAGAGTTGACT 7270 Query 200 CCGAACGCCTTA-GTA-TTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||| |||| || ||| |||||||||| ||||||||||| |||| |||| Sbjct 7271 CCG--CGCCCTAGGTATTTCTCTACCTACCCACCTGTGTCTGTTTGAGGTA 7319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694128996078