Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq11180 307 2e-81 seq8641 279 8e-73 seq11431 120 5e-25 seq11467 100 5e-19 seq2363 80.6 4e-13 >seq11180 Length=19481 Score = 307 bits (340), Expect = 2e-81 Identities = 224/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1262 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1321 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 1322 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 1381 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 1382 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 1441 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1442 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 1501 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 1502 AAAGAGCTCTCAGTCTGTC 1520 >seq8641 Length=56469 Score = 279 bits (308), Expect = 8e-73 Identities = 218/260 (84%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 38346 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 38405 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | || | | | |||||||||||||||| || Sbjct 38406 CCTGTTATTGCCTCAAACTTCCTCGGCCTAAACGGCCGCAGTCCCTCTAAGAAGCTGCCC 38465 Query 122 ACCAACCATAG---TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | | | | || | |||| |||||||| | ||||||||||||||| |||||| Sbjct 38466 GCGGAGCTGTGCGCTCCGCGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 38525 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 38526 TAACCTGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 38585 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 38586 GAAAGAGCTCTCAGTCTGTC 38605 >seq11431 Length=15245 Score = 120 bits (132), Expect = 5e-25 Identities = 81/91 (89%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 168 GTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACC 227 |||| || |||||||| ||||||| ||||| |||||||||||| |||||||||||| | Sbjct 1645 GTTAACGAAATTAACCTTACAAATCGCTCCAGTAACTAAGAACGGTCATGCACCACCATC 1704 Query 228 CATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| || Sbjct 1705 CATAGAATCAAGAAAGAGCTATCAATCTATC 1735 >seq11467 Length=20650 Score = 100 bits (110), Expect = 5e-19 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||| ||| ||| ||||||||||||||||| ||||||||| Sbjct 1304 ACTCGCTGAATACATCAGTGTAGCACGCATGCAGCCCAGAACATCTAAGGACATCACAGA 1245 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | ||||||||||||||| | || | | | ||||||||||||||| Sbjct 1244 CCTAT--TTGCCTCAAACTTCCTCGGCCTAAACGGCCGCAGTCCCTCTAAGAAG 1193 >seq2363 Length=44622 Score = 80.6 bits (88), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 9/207 (4%) Strand=Plus/Minus Query 58 CAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC 117 || |||| ||||| ||| ||| |||| ||| | | ||| || |||||||||||| | Sbjct 40906 CAAACCTATTATTCCCTTAAAGTTCCTTTGCTTAGGGACCA-TACTCCCTCTAAGAACCT 40848 Query 118 AGCCACCAACC---ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 |||| | | | | ||| | | |||| ||| | || |||| || || Sbjct 40847 CTCCACGAGGTTAAAAACTATATGTAGATCGTTAGTAGGAGGATGTTCCGTTTATTTTCA 40788 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC----ACCACCCAT 230 ||||||||| |||||||||| | |||||||| | ||||||||||| | ||||||| Sbjct 40787 GAATTAACCCAACAAATCACTTCGTCAACTAAGGATGGCCATGCACCTCCAATCACCCAT 40728 Query 231 AGAATCAAGAAAGAGCTATCAATCTGT 257 | |||||||||| ||| | |||||| Sbjct 40727 ACAATCAAGAAA-CGCTTTATATCTGT 40702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796489032366