Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq297 183 6e-44 seq4349 163 6e-38 seq19325 136 8e-30 seq37360 131 3e-28 seq21803 131 3e-28 seq16668 118 2e-24 seq2 107 4e-21 seq4653 77.0 6e-12 seq15061 75.2 2e-11 >seq297 Length=119073 Score = 183 bits (202), Expect = 6e-44 Identities = 180/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 75855 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 75914 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 75915 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 75973 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 75974 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 76033 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 76034 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 76083 >seq4349 Length=32798 Score = 163 bits (180), Expect = 6e-38 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||| |||| | |||||| |||||| |||||||||| |||||||||||| Sbjct 9337 GGACAGTCTCAGGTAGACAGTTTCTATGGGGCATAGGCCTCCCAAAAGGTAACGGAGGCG 9278 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTG 230 ||||| | |||| | ||| ||| | || | | |||||||||||| ||| | | Sbjct 9277 TGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGAGAG 9219 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||| Sbjct 9218 CTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGT 9159 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | ||||| || |||||||| ||||||||||| ||| || |||||| Sbjct 9158 GCCAAGTGGAAGGGTCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 9110 >seq19325 Length=11105 Score = 136 bits (150), Expect = 8e-30 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||| ||| |||| | ||||| |||||| |||||||||| |||| |||||| Sbjct 5516 GGGATAGTCTCAGGTAGATAGTTTATATGGGGCATAGGCCTCCCAAAAGGTAAAGGAGGC 5575 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAA-GGG 228 ||||| | |||| | ||||||| | ||| | ||||||||||||||| ||| Sbjct 5576 ATGCAAAGGTTTCCTCGGGCCGGATGGAGA--ATGGCCTTGAGTGCAAAGGCAAAAAGGG 5633 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 | |||||||| | | || | || || ||||| ||||||||| |||| ||||| | || Sbjct 5634 AGCTTGACTGCAAGATCCACCCATCGAGTAGGGATGAAAGTCGGCCTTAGTGATCTGACG 5693 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||| || |||||||| ||||||||||| ||| || |||||| Sbjct 5694 ATGCTGAGTGGAAGGGTCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 5744 >seq37360 Length=1158 Score = 131 bits (144), Expect = 3e-28 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | ||||| ||||| | |||||||||| ||||||||| | Sbjct 588 GGGACAGTCTCAGGTAGATAGTTTCTATGGGGTGTAGGCCTCCCAAAAGGTAACGGAGAC 647 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | | ||||| | || | | |||||||||||| ||||| Sbjct 648 GTGCAAAGGTTTCCTCGGGCCGAATGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 706 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | ||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| | | Sbjct 707 GCTTGACTGGAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACAG 766 Query 290 TGCTGAATGGAACGGCCGTCGCTC 313 ||| || ||||| ||||||||||| Sbjct 767 TGCCGAGTGGAAGGGCCGTCGCTC 790 >seq21803 Length=7378 Score = 131 bits (144), Expect = 3e-28 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | ||||| ||||| | |||||||||| ||||||||| | Sbjct 1393 GGGACAGTCTCAGGTAGATAGTTTCTATGGGGTGTAGGCCTCCCAAAAGGTAACGGAGAC 1334 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | | ||||| | || | | |||||||||||| ||||| Sbjct 1333 GTGCAAAGGTTTCCTCGGGCCGAATGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 1275 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | ||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| | | Sbjct 1274 GCTTGACTGGAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACAG 1215 Query 290 TGCTGAATGGAACGGCCGTCGCTC 313 ||| || ||||| ||||||||||| Sbjct 1214 TGCCGAGTGGAAGGGCCGTCGCTC 1191 >seq16668 Length=9150 Score = 118 bits (130), Expect = 2e-24 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| ||| | | |||||| ||||| | |||||||||| ||||| ||| | Sbjct 627 GGGACAGTCTCAAGCAGACAGTTTCCATGGGGTGTAGGCCTCCCAAAAGGTAACAGAGAC 568 Query 171 GCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGG 228 | ||||| | ||| ||| | ||||| | || | | |||||||||||| ||||| Sbjct 567 GTGCAAAGGTTTCCTTGAGCCAG-ATGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGG 510 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 | ||||||| | |||| | || |||||||||||||||||| |||| ||||| | | Sbjct 509 AGCTTGACTGTAAGACCCACTCATCGAGCAGGGACGAAAGTCGGCCTTAGTGATCTGACA 450 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| || ||| |||| || ||||||| | | || |||||| Sbjct 449 ATGCCGAGTGGAAGGGTCGTTGCTCAACAGATAAAAATTGCACTAGGGATA 399 >seq2 Length=225651 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 50566 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 50625 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| || | ||| | || || | || || | ||| Sbjct 50626 TGTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 50680 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 50681 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 50740 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 50741 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 50791 >seq4653 Length=31453 Score = 77.0 bits (84), Expect = 6e-12 Identities = 90/122 (74%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||| | | ||||| | |||| | || ||||| || | ||||| Sbjct 3649 AGTGCAAAGGCAGAAGAGAGCTTGACAATAAGACCCACCCATCGAGCAGAGATGGAAGTC 3708 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 | |||| ||||||| | ||| ||||| ||| || ||||| || || ||||||| ||| Sbjct 3709 AGCCTTAGTGATCCGACAGTGATGAATTGAAGGGTCGTCGGTCAACAAATAAAAGTTACT 3768 Query 331 CT 332 || Sbjct 3769 CT 3770 >seq15061 Length=10779 Score = 75.2 bits (82), Expect = 2e-11 Identities = 143/211 (68%), Gaps = 16/211 (8%) Strand=Plus/Minus Query 130 AGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGC 189 ||||| || |||| |||||||||| |||| |||||| ||||| | ||||| Sbjct 2587 AGTTTCTATGAGGCGTATGCCTCCCAAAAGGTAATGGAGGCATGCAAAGGTTTTCTCAGG 2528 Query 190 TTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTC 248 | ||| | || | | |||||||||||| ||||| | ||||||| | |||| | Sbjct 2527 CCAAACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGGAAGACCCAC 2469 Query 249 AAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGT 308 ||| |||||||||||| | ||| |||||| || ||||| || | | Sbjct 2468 TCGTCGAGCAGGGACGAAGG--------------CCGACGGTGCAGAGTGGAAGGGTCAT 2423 Query 309 CGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | ||| ||||||||||| ||| || ||||| Sbjct 2422 CTCTCAACGGATAAAAGTTACTCTAAGGATA 2392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982004230336