Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq297 107 2e-21 seq2 107 2e-21 seq15061 89.7 6e-16 seq5036 89.7 6e-16 seq2312 84.2 2e-14 seq2783 75.2 1e-11 >seq297 Length=119073 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 75695 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 75636 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 75635 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 75577 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 75576 ACAAGGAATTTCGCTACCTTAGGACCGTTA 75547 >seq2 Length=225651 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 50422 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 50363 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 50362 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 50303 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 50302 GACAAGGAATTTCGCTACCTTAGGACAGTTA 50272 >seq15061 Length=10779 Score = 89.7 bits (98), Expect = 6e-16 Identities = 96/131 (73%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 43 GCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNN 102 || |||| || |||||||||| | | | |||||||||||| | | ||||||| Sbjct 2774 GCAGGTAGTCTGCATCTTCACAAACATATCTATTTCACTGAGCCTATGTCCGAGACAGTA 2833 Query 103 NNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 162 |||||| ||| ||||||||| ||||||| |||||||||||| |||||| | Sbjct 2834 CCCAGATCGTTACACCTTTCATGCAGGTCGAAACTTACACGACAAGGAATTCCGCTACTT 2893 Query 163 TAGGACCGTTA 173 ||||||| ||| Sbjct 2894 TAGGACCATTA 2904 >seq5036 Length=29953 Score = 89.7 bits (98), Expect = 6e-16 Identities = 108/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| | |||| || |||||||||| || | | ||||||||| | Sbjct 1309 CGGGGTCTTACCGTCTAGCTGTTGGTACTCAGCATCTTCACGGAGAATTCAATTTCACCG 1250 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || || | |||||| |||||||||||||||||||| ||||| | Sbjct 1249 AGTCCATGTCGAAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 1190 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||| ||| |||||| | |||| Sbjct 1189 GACAAGGAATTTCACTATCTTAGGGCAGTTA 1159 >seq2312 Length=44952 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||||||||||||||||| ||||| | ||||||||||||||||||||||||| ||| Sbjct 25840 TACACCATTCGTGCAGGTCGTTACTTATGCAACAAGGAATTTCGCTACCTTAGGACAGTT 25899 Query 173 A 173 | Sbjct 25900 A 25900 >seq2783 Length=41469 Score = 75.2 bits (82), Expect = 1e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 168 ||||||||||||||| |||| ||||| ||| ||||||||||||||||||||||| Sbjct 26938 TACACCATTCGTGCAAGTCGCTACTTATGCGATAAGGAATTTCGCTACCTTAGGAC 26883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546986443914