Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq297 122 7e-26 seq247 118 9e-25 seq13171 113 4e-23 seq14803 100 2e-19 seq1728 93.3 4e-17 seq4536 91.5 1e-16 seq4152 78.8 8e-13 >seq297 Length=119073 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 70980 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 70921 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 70920 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 70861 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 70860 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 70821 >seq247 Length=183695 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 57631 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 57689 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 57690 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 57749 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 57750 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 57789 >seq13171 Length=16725 Score = 113 bits (124), Expect = 4e-23 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 12424 CGAGTTGCAACCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 12365 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 12364 GATCGCAACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 12305 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 12304 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 12265 >seq14803 Length=11039 Score = 100 bits (110), Expect = 2e-19 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||| | ||| | ||| ||| ||||||| | ||||||| Sbjct 1417 CGAGTTGCAGCCTGCAATCTGAACTGGGGATGGGTTTTTGGAGTTAGCTCACACTCGCGG 1358 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | | |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 1357 GATCATGACCCTTTGTCCCAGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 1298 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||| | ||||||||||||| || |||| Sbjct 1297 GATGACTTGACGTCATTCTCACCTTCCTCCGGCTTATCAC 1258 >seq1728 Length=51352 Score = 93.3 bits (102), Expect = 4e-17 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| |||| ||||||||||||||| ||||||||||||||||||| Sbjct 5576 CCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCA 5635 Query 143 CCTTCCTCC 151 ||||||||| Sbjct 5636 CCTTCCTCC 5644 >seq4536 Length=31949 Score = 91.5 bits (100), Expect = 1e-16 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 37 TTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGT 96 || ||| ||||||| |||||||||| | ||| |||| ||| |||||||| |||| Sbjct 18664 TTTTGGAGTTAGCTCACCCTCGCGGGATCGCGACCCTTTGTCCCGGCCATTGTAGCACGT 18605 Query 97 GTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 ||| |||| |||||||| ||| | ||||||||||||| | ||| ||||||||| || Sbjct 18604 GTGTCGCCCAGGGCATAAGGGGCATAATGACTTGACGTCATGCTCACTTTCCTCCGGCTT 18545 >seq4152 Length=33757 Score = 78.8 bits (86), Expect = 8e-13 Identities = 80/104 (77%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 58 GCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGG 117 ||||| | ||| |||| ||| ||||||| |||||| |||| |||||||| Sbjct 16012 GCGGGATCGCGACCCTTTGTCCCGGCCATTGT----CGTGTGTTGCCCAGGGCATAAGGG 15957 Query 118 CCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||| ||||||||||||||| ||||||||||||| || |||| Sbjct 15956 GCATGATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 15913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415837647420