Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq297 172 9e-41 seq247 143 4e-32 seq1657 122 1e-25 seq14803 105 1e-20 seq14352 104 4e-20 seq149 84.2 4e-14 seq12692 73.4 7e-11 >seq297 Length=119073 Score = 172 bits (190), Expect = 9e-41 Identities = 209/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 70427 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 70368 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 70367 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 70308 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | |||||| | Sbjct 70307 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGACA 70248 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 70247 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 70188 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||||||| || Sbjct 70187 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 70143 >seq247 Length=183695 Score = 143 bits (158), Expect = 4e-32 Identities = 206/288 (72%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| |||||||||| || |||| | | |||||||| ||| || Sbjct 58515 CCCATGCTTTCGCACCTCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 58574 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| || |||||||| ||||||||| |||||| | ||||| ||| Sbjct 58575 TCCTTCGTAGATCTGCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 58634 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| || ||||| | ||| || | | || | | | |||||| | Sbjct 58635 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCA--GTTTTTGGCGAC---TTTCACTTTCA 58689 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | | |||||||| ||||||||| |||| | | |||| | ||| |||||| || Sbjct 58690 ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCC 58749 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||| |||| |||| ||||| |||||| Sbjct 58750 CCGTCTTACCGCGGCTGCTGGCACGGAGTTTGCCGGGGCTTCTTCCTC 58797 >seq1657 Length=52216 Score = 122 bits (134), Expect = 1e-25 Identities = 180/255 (71%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||| | || |||| | |||||||| | Sbjct 19535 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGTAGAGTGCTTTCGTCGTTGGTGTTCTTT 19476 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| || | |||||| ||||| || | | |||| || Sbjct 19475 CCGATCTCTACGCATTTCACCGCTCCATCGGAAATTCCCTTTGCCCCTACCGTACTCCAG 19416 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||| ||| | ||| || | |||||| | Sbjct 19415 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGATCCCTAGGATTTGACGGCGGACTTGACA 19356 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||| ||||| ||| || ||| Sbjct 19355 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACTCTTGCATCCTCTGTCTTA 19296 Query 246 CCGCGGCTGCTGGCA 260 ||||||||||||||| Sbjct 19295 CCGCGGCTGCTGGCA 19281 >seq14803 Length=11039 Score = 105 bits (116), Expect = 1e-20 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 55 TGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTC 114 |||||||| | | || |||| |||||| |||||| ||| | |||||| |||| | Sbjct 815 TGGTGTTCTTTCCGATCTCTATGCATTTTACCGCTCCACCAGAAATTCCCTCTGCCCCAA 756 Query 115 CAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACAT 174 | |||| || | |||| | ||| | ||||||||||| || ||| | Sbjct 755 TCGTACTCCAGCTTGGTACTTTCCACCGCATGTCCAGGGTTGAGCCCTGAGATTTGATGG 696 Query 175 CTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCA 234 | ||| || | | |||| | | ||||| |||||||| |||||||||||||||| Sbjct 695 CGGACATGACAAGACACCTAGAGACGTTTTACGCCCAATAATTCCGGATAACGCTTGCAT 636 Query 235 CCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| | ||||||||| |||| |||| ||||||||| ||||||||||||| || Sbjct 635 CCTCTATCTTACCGCGGTTGCTAGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 580 Score = 95.1 bits (104), Expect = 2e-17 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 ||||||||| | | ||| || | |||||| | || ||||| | |||||| ||| Sbjct 6963 GGGTTGAGCTCTGGGATTTAACGACAGACTTGACAAGCCAACTACAGACGCTTTACGCCC 6904 Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270 || | |||||||||||||||| ||| || |||||| ||||||| ||| ||||||| Sbjct 6903 AAACATTCCGGATAACGCTTGCATCCTCTGTCTTACCGTGGCTGCTAGCATAGAGTTAGC 6844 Query 271 CGTGGCTTATTCCTCAGGTA 290 || ||||||||||||| || Sbjct 6843 CGATGCTTATTCCTCAGATA 6824 >seq14352 Length=11509 Score = 104 bits (114), Expect = 4e-20 Identities = 175/251 (70%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 || || | || |||||||| | ||| |||| | ||||||||||| ||| |||||| Sbjct 2499 GCTTTTGTCATTGGTGTTCTTTTTTATCTCTAGG-ATTTCACCGCTCCACCAAAAATTCC 2441 Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTAT----GGGTTGAGC 159 |||| || | | |||| || ||||| | || |||| ||||||||| Sbjct 2440 CTCTGCCCCTACTGTACTCCAGCTTGGTAGTTTTCACCGC---CTATCCACGGGTTGAGC 2384 Query 160 CCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCC 219 || | ||| || | |||||| | || |||||| |||||| |||||| | || Sbjct 2383 CCTGGGATTTGACGGCGGACTTGACAAGCCACCTACAGATGCTTTACGCCCAATCATTCT 2324 Query 220 GGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTA 279 |||| |||||||| ||| | ||||||||||||||||||| ||||||| | ||||| Sbjct 2323 GGATTACGCTTGCATCCTCTATCTTACCGCGGCTGCTGGCACAGAGTTAGCTGATGCTTA 2264 Query 280 TTCCTCAGGTA 290 ||||| || || Sbjct 2263 TTCCTTAGATA 2253 >seq149 Length=111170 Score = 84.2 bits (92), Expect = 4e-14 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 168 TTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACG 227 || ||| | |||||| | || |||||| || | ||| ||||| | || |||||||| Sbjct 35898 TTGACAGCGGACTTGACAAGCCACCTACAAGCGCCTTATTGCCAATCATTCTGGATAACG 35839 Query 228 CTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286 ||||| ||| || |||||| |||||||||||| ||||||| | ||||||||||| Sbjct 35838 CTTGCATCCTCTGTCTTACCGTGGCTGCTGGCACAGAGTTAGCTGATACTTATTCCTCA 35780 >seq12692 Length=13512 Score = 73.4 bits (80), Expect = 7e-11 Identities = 61/75 (81%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 216 ATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGG 275 ||| |||||| |||||| ||| || |||| || ||||||||||| ||||||||| | Sbjct 11869 ATCTGGATAATGCTTGCATCCTCTGTCTTACTGCAGCTGCTGGCACAGAGTTAGCCGATG 11928 Query 276 CTTATTCCTCAGGTA 290 |||||||||||| || Sbjct 11929 CTTATTCCTCAGATA 11943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828476543706