Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq11180 127 2e-27 seq8641 125 7e-27 >seq11180 Length=19481 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 2011 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 1952 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 1951 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 1894 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 1893 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 1834 Query 190 T 190 | Sbjct 1833 T 1833 >seq8641 Length=56469 Score = 125 bits (138), Expect = 7e-27 Identities = 137/178 (77%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||||| Sbjct 39093 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATAGCTCTGTATACATTAGCATGGG 39034 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | | |||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 39033 ATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 38976 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 38975 AGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 38918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511800181440