Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq297 264 2e-68 seq2 196 8e-48 seq1083 163 4e-38 seq19325 161 2e-37 seq19246 138 2e-30 seq243 138 2e-30 seq16668 107 3e-21 seq3528 105 1e-20 seq26581 89.7 8e-16 seq6049 87.8 3e-15 seq12443 80.6 4e-13 seq3134 75.2 2e-11 seq30795 73.4 6e-11 >seq297 Length=119073 Score = 264 bits (292), Expect = 2e-68 Identities = 223/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 76406 GGTGGGCTTGCTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 76347 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 76346 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 76287 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||| | |||||| ||||||||||||||| || Sbjct 76286 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCGCACCGGATATGGACCGAACTGTCTCACG 76227 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 76226 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 76167 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 76166 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 76134 >seq2 Length=225651 Score = 196 bits (216), Expect = 8e-48 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 51092 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 51033 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 51032 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 50973 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 50972 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 50913 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || |||| || |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 50912 ACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 50853 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 50852 AGTCGACATCG 50842 >seq1083 Length=62835 Score = 163 bits (180), Expect = 4e-38 Identities = 187/251 (75%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| || || ||| |||||| ||||| ||| | Sbjct 55322 CAGCAGTTCTTCCATACCAACTTAGCTGTCCGGCGCTGCTATTGGCATAACAACCGGTAC 55381 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| ||| ||| ||||||||||||| || | ||||| || | ||| Sbjct 55382 ACCATAGGTTGACCCAACCCAATCCTCTCGTACTAGGGTTGGTTCCTCGCAGTTCTCCCT 55441 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| ||||| ||||||||||||| |||| |||| |||||| ||| ||| Sbjct 55442 TTAACACCAACGGTAAATAGGAACCGAACTGTCTCACGACATTCTAAACCCAACTCACGT 55501 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || |||| || |||||||| || ||||||| |||||| ||| | |||||||||| || | Sbjct 55502 ACCACTTTCATCGGCGAACAACCGAACCCTTAGGACCTTCTTAAACCCCAGGATGTGATG 55561 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 55562 AGTCGACATCG 55572 >seq19325 Length=11105 Score = 161 bits (178), Expect = 2e-37 Identities = 156/197 (79%), Gaps = 5/197 (3%) Strand=Plus/Minus Query 80 AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCA 139 ||||||| |||||||||| ||| ||| |||||||||||||| ||| || |||||||| Sbjct 5987 AACTGGTACACCAGAGGTGCATCCTTCCTAGTCCTCTCGTACTAGGGAAAGGTCCTCTCA 5928 Query 140 AATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCT 199 | || || |||| | |||||| ||||| ||||||||| ||||||| ||||||||||| Sbjct 5927 ATGCTCTAACACCCATGTCGGATATGGACC-AACTGTCTCACGACGTTTTGAACCCAGCT 5869 Query 200 CGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAG-CCCCAGGAT 258 | | || ||||||||||| |||| ||||| |||||| || || | ||| ||||||| Sbjct 5868 C---TACCGCTTTAATGGGCAAACAACCCAATCCTTGGAACATATTACAGCCCCCAGGTG 5812 Query 259 GAGACGAGCCGACATCG 275 | | ||| |||||||| Sbjct 5811 GCCAAGAGTCGACATCG 5795 >seq19246 Length=6875 Score = 138 bits (152), Expect = 2e-30 Identities = 137/176 (78%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 100 GTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACG 159 |||| | | ||||||||||||||| | | || | ||||||| || |||||| | || Sbjct 5365 GTCCTTTCTGGTCCTCTCGTACTAGGAAAAGGTTCTCTCAATGCTCTAACGCCCGCACCG 5306 Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 ||| ||||| || |||| | ||| ||| |||||||| |||||| || ||||||||||| Sbjct 5305 AATATGGACCAAATTGTCCCACGATGTTTTGAACCCAATTCGCGTACCACTTTAATGGGC 5246 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAG-CCCCAGGATGAGACGAGCCGACATC 274 |||| |||||||||||| || |||| || ||||| | || || ||||||||||| Sbjct 5245 CAACAACCCAACCCTTGGAACATACTAGAGCCCCCAAGTTGCGAAGAGCCGACATC 5190 >seq243 Length=113323 Score = 138 bits (152), Expect = 2e-30 Identities = 96/109 (88%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226 ||||||||||||| ||||||| |||||||||| | ||| || |||||||||||||||||| Sbjct 97658 ACCGAACTGTCTCACGACGTTTTGAACCCAGCCCACGTACCGCTTTAATGGGCGAACAGC 97599 Query 227 CCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||||| || |||| |||||||||| | || |||||||||||| Sbjct 97598 CCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 97550 >seq16668 Length=9150 Score = 107 bits (118), Expect = 3e-21 Identities = 92/111 (83%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224 |||| |||||||||| |||||||||||||||||||| | | || ||||| ||||||||| Sbjct 240 GGACTGAACTGTCTCACGACGTTCTGAACCCAGCTCACATACC-GTTTAAAGGGCGAACA 298 Query 225 GCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||| |||| || | || || ||||||| | || ||||||||||| Sbjct 299 GCCCAACCTTTGGAACATGCTACAACCCCAGGTGGCGA-AAGCCGACATCG 348 >seq3528 Length=65826 Score = 105 bits (116), Expect = 1e-20 Identities = 125/169 (74%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 110 GTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT----ACGCCCACGACGGATAGG 165 |||||||| || || || ||||||| ||| | ||| || || | | |||||| Sbjct 57093 GTCCTCTCATAGTAGGGTTGGCTCCTCGCAATTCTCCCTTTAACACCAATGGTAGATAGG 57152 Query 166 GACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAG 225 | ||||||||||| || ||||| |||||| ||| ||| || |||| || | |||||| Sbjct 57153 AATCGAACTGTCTCATGATGTTCTAAACCCAACTCACGTACCACTTTCATCGACGAACAA 57212 Query 226 CCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATC 274 || || | ||||||||| ||||| ||||| |||| || ||| |||||| Sbjct 57213 CCGAATCTTTGGGACCTTCTTCAACCCCAAGATGTGATGAGTTGACATC 57261 >seq26581 Length=2556 Score = 89.7 bits (98), Expect = 8e-16 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 169 CGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCC 228 ||||||||||| |||||||||||||||||||| | | || |||||||||||||||||||| Sbjct 974 CGAACTGTCTCACGACGTTCTGAACCCAGCTCACATACCGCTTTAATGGGCGAACAGCCC 1033 Query 229 AA 230 || Sbjct 1034 AA 1035 >seq6049 Length=26615 Score = 87.8 bits (96), Expect = 3e-15 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 184 CGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTA 243 ||||||||||| ||||| || || |||||||||||||||| || ||||||||| || || Sbjct 10542 CGTTCTGAACCTAGCTCATGTACCGCTTTAATGGGCGAACAACCTAACCCTTGGAACATA 10483 Query 244 CTTCAGCCCCAGGATGAGACGAGCCGAC 271 || || ||| ||| |||| ||| |||| Sbjct 10482 CTACATCCCTAGGTGGAGAAGAGTCGAC 10455 >seq12443 Length=13830 Score = 80.6 bits (88), Expect = 4e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGG 237 ||| |||||||||||||||| ||| || | ||||||||||||||||||||||||||| Sbjct 879 CGATGTTCTGAACCCAGCTCACGTACCACCTTAATGGGCGAACAGCCCAACCCTTGG 823 >seq3134 Length=39090 Score = 75.2 bits (82), Expect = 2e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 204 TGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGAC 263 |||| |||||||||||||||| |||||||||||| || |||| |||||||||| | || Sbjct 14025 TGCCGCTTTAATGGGCGAACAACCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAA 13966 Query 264 GAGC 267 |||| Sbjct 13965 GAGC 13962 >seq30795 Length=1715 Score = 73.4 bits (80), Expect = 6e-11 Identities = 71/90 (79%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 48 ACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 |||| ||| |||||| | | | | |||| | ||||||| |||||||||| |||| || Sbjct 972 ACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTC 1031 Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 | ||||||||||||||| ||| || ||||| Sbjct 1032 CTGGTCCTCTCGTACTAGGGAAAGGTCCTC 1061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780495276696