Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq11180 320 3e-85 seq8641 302 9e-80 seq11467 181 2e-43 seq15169 129 1e-27 seq16720 120 6e-25 >seq11180 Length=19481 Score = 320 bits (354), Expect = 3e-85 Identities = 263/316 (83%), Gaps = 13/316 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 1429 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 1374 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | | | || | | |||||||||||||||||||||||||||||| Sbjct 1373 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 1314 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| Sbjct 1313 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCA-CACC 1255 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 1254 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 1196 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 1195 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 1136 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 1135 GTCCCTGCCCTTTGTA 1120 >seq8641 Length=56469 Score = 302 bits (334), Expect = 9e-80 Identities = 261/319 (82%), Gaps = 16/319 (5%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCC---CGCTTTG----GCGGGTCGCCGGC 72 || |||||||| | |||||||| |||| | || ||| | ||||| | || Sbjct 38514 GAACGAGACCTCAGCCTGCTAACTAGCTACGCGGAGCGCACAGCTCCGCGGG----CAGC 38459 Query 73 TTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||| |||| | | ||||| ||||||||||||||||||||||||||| Sbjct 38458 TTCTTAGAGGGACTG-CGGCCGTTTAGGCCGA-GGAAGTTTGAGGCAATAACAGGTCTGT 38401 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 38400 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATA 38341 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | |||||||||| ||| | ||||| |||||||||| |||| Sbjct 38340 GCCTTGGCCGACAGGCCCGGGTAATCTTTGAAAATTTCATCGTGATGGGGATAGATCATT 38281 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| Sbjct 38280 GCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 38221 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 38220 TACGTCCCTGCCCTTTGTA 38202 >seq11467 Length=20650 Score = 181 bits (200), Expect = 2e-43 Identities = 176/222 (79%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| |||| | | ||||| ||||||||||||||| | ||||||| Sbjct 1193 CTTCTTAGAGGGACTG-CGGCCGTTTAGGCCGA-GGAAGTTTGAGGCAA--ATAGGTCTG 1248 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||| ||||||||||||||||| ||| ||| |||||||||| | || ||||| || Sbjct 1249 TGATGTCCTTAGATGTTCTGGGCTGCATGCGTGCTACACTGATGTATTCAGCGAGTCTAT 1308 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||| || ||| | |||||||||| ||| | |||| |||||||||| ||| Sbjct 1309 AGCCTTGGTCGACAGGCCCGGGTAATCTTCGAAAATTTCATCGTAATGGGGATAGATCAT 1368 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGT 290 ||||||| ||| |||||||| |||||| |||| |||||| || Sbjct 1369 TGCAATTGTTGGTCTTCAACAAGGAATTCCTACTAAGCGTGT 1410 >seq15169 Length=13453 Score = 129 bits (142), Expect = 1e-27 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210 GTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACG 269 |||||||| ||| | | ||||| |||||||||| |||||||||| ||| ||||||||| Sbjct 2905 GTAATCTTCAAAAAATTTATCGTGATGGGGATAGATCATTGCAATTTTTGGTCTTCAACG 2846 Query 270 AGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| || |||||||||| || |||| |||| | |||||| |||||| |||||||||||| Sbjct 2845 AGGTATTCCTAGTAAGCACGAGTCACCAGCTCACGTTGACTACGTCTCTGCCCTTTGTA 2787 >seq16720 Length=9106 Score = 120 bits (132), Expect = 6e-25 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 243 GAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACG 302 || |||||||||| ||| ||||||||||||||| || |||||||||| ||||||||| || Sbjct 2887 GATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCCAGTAAGCGCGAGTCATCAGCTCG 2946 Query 303 CGTTGATTACGTCCCTGCCCTTTGTA 328 |||||| ||||||||||||||||||| Sbjct 2947 CGTTGACTACGTCCCTGCCCTTTGTA 2972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946818411008