Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq297 136 8e-30 seq14803 114 3e-23 seq14352 113 1e-22 seq247 111 3e-22 seq12692 96.9 7e-18 seq120 95.1 3e-17 seq13213 87.8 4e-15 seq149 87.8 4e-15 >seq297 Length=119073 Score = 136 bits (150), Expect = 8e-30 Identities = 197/279 (71%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 70183 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 70135 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 70134 GC------TTCTTCTCCGAGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 70082 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 70081 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 70022 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 70021 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 69962 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || ||||| | || |||| ||||| Sbjct 69961 CATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAAT 69923 >seq14803 Length=11039 Score = 114 bits (126), Expect = 3e-23 Identities = 192/279 (69%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||| ||| |||||||||||||||||||| | || ||| || | Sbjct 6864 GGCTGCTAGCATAGAGTTAGCCGATGCTTATTCCTCAGATACTGTCAT-----------T 6816 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | || |||||||||| || | |||| | ||||| ||| |||| Sbjct 6815 GC------TTCTTCTCATAGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGA 6763 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||| ||| Sbjct 6762 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCATAG 6703 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||| ||| ||| ||||| || | ||||||| || | ||| || Sbjct 6702 GAGTCTGGGCCGTGTCTTAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 6643 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | || ||| || ||||| | || |||| ||||| Sbjct 6642 GATCGTCTTGGTAAGCTATTACCTCACCAACTAGCTAAT 6604 Score = 100 bits (110), Expect = 6e-19 Identities = 189/279 (68%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 || |||| |||| |||||||||||||||||||| | || ||| || | | || Sbjct 620 GGTTGCTAGCACAGAGTTAGCCGATGCTTATTCCTCAGATACTGTCAT--TGCTAC---- 567 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 ||| | | |||||||||| | | |||| | ||||| ||| |||| Sbjct 566 -----------TTCTCCGAGAAAAGAAGTTCATGACCCGTGGG-CCTTCTACCTCCACGA 519 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| || ||||||||| |||| Sbjct 518 GTCATTGCTCCGTCAGGCTTTCGCCCATTGTAGAAAATTCCCCATTGCTGCCTCTTGTAG 459 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||||||| || ||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 458 GAGTTTGGGCCATGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 399 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | | ||| || ||||| | || |||| ||||| Sbjct 398 CATCGCGTTGGTAAGCTATTACCTCACCAACTAGCTAAT 360 >seq14352 Length=11509 Score = 113 bits (124), Expect = 1e-22 Identities = 193/279 (69%), Gaps = 22/279 (8%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||| ||||||||||| | || ||| ||| Sbjct 2293 GGCTGCTGGCACAGAGTTAGCTGATGCTTATTCCTTAGATAC---------------CGT 2249 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || ||| | | |||||||||| || | | ||| ||||| ||| ||||| Sbjct 2248 --AA---TTGCTTCTCCGAGAAAAGAAGTTCACGACCTATAGG-CCTTCTACCTCCACGC 2195 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| ||| ||| | | ||||| || ||||| |||||||||||||| ||| Sbjct 2194 GGCATTGCTCTGTCAAACTTTTGCTCATTGTGGAAAATTCCCCACTGCTGCCTCCC-TAG 2136 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | || |||| || | |||| || Sbjct 2135 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCTTCTCGGACCAGCTATTGAT 2076 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || ||||| | || |||| ||||| Sbjct 2075 CATCGCCTTGGTAAGCTATTACCTCACCAACTATCTAAT 2037 >seq247 Length=183695 Score = 111 bits (122), Expect = 3e-22 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 58850 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 58909 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 58910 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 58969 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| || ||||| || |||||||||| || Sbjct 58970 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCTTTTACCTGACCAACTACCTAATACTAC 59029 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 59030 GCAGGCTCATCAAACAGCG 59048 >seq12692 Length=13512 Score = 96.9 bits (106), Expect = 7e-18 Identities = 157/227 (69%), Gaps = 18/227 (8%) Strand=Plus/Plus Query 2 GCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGTG 61 ||||||||||| |||||||||||||||||||| | || ||| || || Sbjct 11904 GCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACTGTCAT-----------TG 11952 Query 62 GAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCT 121 || ||| | | |||||||||| | | |||| | ||||| |||||| || Sbjct 11953 C------TTCTTCTCCGACAAAAGAAGTTCATGACCCGTGGG-CCTTCTACCTTCATGCG 12005 Query 122 ACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGG 181 | | ||| | || || || ||||| || ||||| ||||||||||||||||||| Sbjct 12006 GCATTGCTCCGTTAGGCTTTCTCCCATTACGGAAAATTCCCCACTGCTGCCTCCCGTAGG 12065 Query 182 AGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||| ||| |||||||| ||| | | ||||| || | ||||||| || Sbjct 12066 AGTCTGGGCCGTGTCTTAGTCCTAGTGTGGTTGATCATCCTCTCGGA 12112 >seq120 Length=115836 Score = 95.1 bits (104), Expect = 3e-17 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204 |||||| || ||||| || || |||||||||||||||| ||| ||||||||||| || Sbjct 33845 CCATTGCGGAAAATTCCCCATTGTTGCCTCCCGTAGGAGTCTGGGTCGTGTCTCAGTCCC 33904 Query 205 AATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCC 264 | ||||| || | ||||||| |||| |||| ||| | | || ||| || ||||| Sbjct 33905 AGTGTGGTTGATCATCCTCTCGGAACAACTATTGATCATCGCCTTGGTAAGCTATTACCT 33964 Query 265 CGCCTACTACCTAAT 279 | || |||| ||||| Sbjct 33965 CACCAACTAGCTAAT 33979 >seq13213 Length=12877 Score = 87.8 bits (96), Expect = 4e-15 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||||||||||| |||||| |||| Sbjct 6754 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTTTCAG 6695 Query 201 TTCCAATGTGG 211 | ||||||||| Sbjct 6694 TCCCAATGTGG 6684 >seq149 Length=111170 Score = 87.8 bits (96), Expect = 4e-15 Identities = 185/279 (66%), Gaps = 19/279 (7%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||| ||| ||||||| | | ||| Sbjct 35816 GGCTGCTGGCACAGAGTTAGCTGATACTTATTCCTCAAATACC----------------- 35774 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | ||| ||| | | |||||||||| ||| |||| || ||||| ||| ||| Sbjct 35773 -GATTGCTTTTTTCTCCAAGAAAAGAAGTTCGCAACCCGTGGA-CCTTCTACCTCCACAT 35716 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| | || || ||| | |||| || ||| | | |||||||||||| ||| Sbjct 35715 AGCAATGCTCCATTAGGCTTTCGCCAATTGCGGAAAATTTCCCGCTGCTGCCTCCCATAG 35656 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||| | ||| || || || | ||||||| |||| ||| || Sbjct 35655 GAGTCTGGGCCGTGTCTCAATCCCAGTGCGGATGATCATCCTCTCGGAACAGCTACTGAT 35596 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || || || ||||| | || |||| ||||| Sbjct 35595 CATCGCCTTCGTAAGCTATTACCTCACCAACTAGCTAAT 35557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068369423232