Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq11180 625 9e-177 seq8641 580 3e-163 seq1740 185 3e-44 seq1936 116 1e-23 seq14713 93.3 1e-16 seq1770 84.2 7e-14 >seq11180 Length=19481 Score = 625 bits (692), Expect = 9e-177 Identities = 451/513 (88%), Gaps = 12/513 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | ||||||||| |||| |||||||||||||||||| Sbjct 2235 GTACTCATTCCAATTACCAGACTCGAAAGAGCCCGGTATTGTTATTTATTGTCACTACCT 2294 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2295 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 2354 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| Sbjct 2355 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTA 2414 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 2415 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCA 2474 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | ||||||||||||| ||| |||||| |||||||| || |||| | | || | Sbjct 2475 CAAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 2532 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 2533 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 2592 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||| Sbjct 2593 AGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGTTACCATCAAACAAACTATAACTGA 2651 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 2652 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCT 2711 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 2712 TAATCTTTGAGACAAGCATATGACTACTGGCAG 2744 >seq8641 Length=56469 Score = 580 bits (642), Expect = 3e-163 Identities = 442/513 (86%), Gaps = 11/513 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | |||||| |||| |||||||||||||||||| Sbjct 39320 GTACTCATTCCAATTACCAGACTCGTT-GAGCCCGGTATTGTTATTTATTGTCACTACCT 39378 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39379 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 39438 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 39439 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 39498 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||| |||||||||| | |||||||| Sbjct 39499 GGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGATGCGTCGCCGGCG 39558 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCA-CCAAGGAGC--CCCGAAG--GGC 294 | | |||| |||||| ||| |||||| |||||||| || ||| || | |||| || Sbjct 39559 CGAGGGCCGTGCGATCCGTCGAGTTATCATGAATCATCCGAGGGGCGGGCGGAAGCCCGC 39618 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTC--CGAAGTCGGGGTTTTTAGCATGTATT 352 || || ||||| ||||||||| | |||||| |||||||||| ||| | ||| ||||| Sbjct 39619 GTCGGCCTTTTACCTAATAAATGCGTCCCTTCCGCGAAGTCGGGATTTGTTGCACGTATT 39678 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| |||| |||||| |||| |||||||| Sbjct 39679 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CGCGTACCATCAAACAAACTATAACTGA 39737 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 39738 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 39797 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 39798 TAATCTTTGAGACAAGCATATGACTACTGGCAG 39830 >seq1740 Length=51228 Score = 185 bits (204), Expect = 3e-44 Identities = 283/398 (71%), Gaps = 14/398 (4%) Strand=Plus/Minus Query 45 TTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTT 104 ||||||| || | ||| | || | |||||| |||||| || | || |||||| ||| Sbjct 48103 TTTATTGGCATTGCCTTCTTGTATGAGGATTGAGTAATT--CGTGTCTTTTGCCTTTCTT 48046 Query 105 GGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC 164 |||||||||||| |||||||| ||| || | | |||| ||||| ||||| ||| ||| Sbjct 48045 GGATGTGGTAGCTGTTTCTCAAACTCACTTTACAGAATTGAACCTGAATTCTTCGTCACC 47986 Query 165 CGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAA 224 | | ||||||| |||||| |||| || ||||||||||||| || ||| |||| || Sbjct 47985 CATGACTACCATGATAGGCCCTTATCATATTGTCGAAAGTTGATATGGTAGATATTTCAA 47926 Query 225 TGAACCATCGCCGGC-TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAG 283 ||| ||| || | | | || || ||| | |||| |||||||| | ||| | Sbjct 47925 TGATGCATACTCGACATAAGGGTTGTGTGATCC-----ATTATCATGAATCATCGAGGGG 47871 Query 284 C----CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCC-TTCCGAAGTCGGGGT 338 | || | || || ||||| ||| ||||| |||| ||| | | || | Sbjct 47870 CGGGTTGAAAATCGTGTCAGTCTTTTACCTATTAAATGTGCCCCTTTCGGTATTCAATAT 47811 Query 339 TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAA 398 | | |||||||||||||||| |||||| | || |||| | |||| ||| | || ||| Sbjct 47810 ATGTTGCATGTATTAGCTCTAAAATTACTATGGATATCTAAGTAGCGCGGTTC-ATAAAA 47752 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA 436 |||| |||| |||||||||||| |||||||||||||| Sbjct 47751 CAAACTATAAATGATTTAATGAGTCATTCGCAGTTTCA 47714 >seq1936 Length=65934 Score = 116 bits (128), Expect = 1e-23 Identities = 87/101 (86%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACAT 463 || ||||||||||||||||||||| ||||| || |||| ||| || ||||||| |||| Sbjct 23778 ATTACTGATTTAATGAGCCATTCGAAGTTTTACAGTATGAATTAGTTCATACTTACACAT 23719 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||| |||||||||||||| |||||||||| |||| |||| Sbjct 23718 GCATGACTTAATCTTTGAGATAAGCATATGATTACTTGCAG 23678 >seq14713 Length=18353 Score = 93.3 bits (102), Expect = 1e-16 Identities = 81/98 (83%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 329 AAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGG 388 ||||| || ||| | ||| ||||||||||||||||||| || ||||| || |||| | | Sbjct 12060 AAGTCAGGATTTATTGCACGTATTAGCTCTAGAATTACTACAGTTATTCAAGTAG-CATG 12118 Query 389 TACTATCAAATAAACGATAACTGATTTAATGAGCCATT 426 ||| || ||| |||| ||||||||||||||||| |||| Sbjct 12119 TACCAT-AAACAAACTATAACTGATTTAATGAGTCATT 12155 >seq1770 Length=50903 Score = 84.2 bits (92), Expect = 7e-14 Identities = 79/101 (78%), Gaps = 5/101 (5%) Strand=Plus/Plus Query 172 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCA 231 || || | ||||| |||||| |||||| ||||||||||||||||||| || ||||| | Sbjct 28635 ACTATTGCAGGCCCCTATCCAACCATCAAAAGTTGATAGGGCAGAAACTTTAATGATCTC 28694 Query 232 TCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAA 272 || | ||| |||||| |||| || |||||||||||| Sbjct 28695 TCACTGGC-----GCCATGTGATTTGTCGAGTTATTATGAA 28730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509791520256