Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq25041 105 4e-21 seq2908 102 5e-20 seq1607 95.1 7e-18 seq5 91.5 8e-17 >seq25041 Length=5667 Score = 105 bits (116), Expect = 4e-21 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||| ||||||||||||| |||||||||| ||||| | |||||| ||| Sbjct 5559 AACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTGAAAGCAACATCCGCCG 5618 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATC 109 |||||| |||||||| ||||| |||| |||||| ||||||||||| || Sbjct 5619 ATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGGTC 5666 >seq2908 Length=48135 Score = 102 bits (112), Expect = 5e-20 Identities = 95/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGA-GTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||| |||||| |||| ||| | |||||| Sbjct 16851 GAACCCAAAAACTTTGATTTCTCATAAAGTGCCG-GCGAAGTCCTGAAAGCAACATCCAT 16793 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| |||||||| |||| |||| |||||| |||||| | ||||||||||||| Sbjct 16792 CGATCCCTGGTCGGCATCATTTATGGTTGAGACTAGGACGGTGTTTGATCGTCTTCGA 16735 >seq1607 Length=110441 Score = 95.1 bits (104), Expect = 7e-18 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| |||||||||||| ||| |||||| ||||| | |||||| || Sbjct 41384 GAACCCAAAAACTTTGATTTCTTATAAAGTGCCGGCGGAGTCCTGAAAGCAACATCCACC 41325 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| |||| |||| |||||| || ||| ||||||| |||| || Sbjct 41324 GATCCCTGGTCGGCATCATTTATGGTTGAGACTAGGATGGTGTCTGATCATCTTAGA 41268 >seq5 Length=51955539 Score = 91.5 bits (100), Expect = 8e-17 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||||||||| || ||||| | ||||||| || Sbjct 21408820 GAACCCAAAT--TTTGATTTCTCGTAAGGTGTCGGTAGAGTCCTGAAAGTAACATCCGCC 21408877 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| | ||||||| |||| ||||||||| | || ||||||| ||| ||||||| Sbjct 21408878 GATCCTTGGTCGGCAATATTTATGGTTAAGACAAGGATGGTATCTAATCATCTTCGA 21408934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278295440790