Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2260 210 4e-52 seq1607 192 1e-46 seq2908 179 7e-43 seq5 161 2e-37 seq12966 143 5e-32 seq1766 113 8e-23 seq1 107 4e-21 seq4 102 1e-19 seq12 77.0 6e-12 >seq2260 Length=73924 Score = 210 bits (232), Expect = 4e-52 Identities = 197/244 (81%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| |||| | |||||||||||||| Sbjct 6616 TTACTTTGAAGAAATTAGAGTGATCAAAGCAAGCCCACGCTCTGGATACATTAGCATGGG 6557 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGT-TTCTAGGACCGCCGTAATGATTA 192 |||| | | |||| | |||| ||||| |||||| ||| || | || |||||||||| Sbjct 6556 ATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGAG-ATCGGAGTAATGATTA 6499 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 | ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 6498 AAAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGA 6439 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||| ||| |||| |||||| || |||| ||||||||||||||||| |||||||||| Sbjct 6438 AAGATGAACCACTGTGAAAGCTTTTGCCAATGATGTTTTCATTAATCA-AGAACGAAAGT 6380 Query 313 TAGG 316 | || Sbjct 6379 TGGG 6376 >seq1607 Length=110441 Score = 192 bits (212), Expect = 1e-46 Identities = 189/240 (79%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 ||||||||| |||||||||||| |||||||| ||| ||||| | |||||||||||||| Sbjct 41024 TTACTTTGAGAAAATTAGAGTGCTCAAAGCAAGCCCATGCTCTGGATACATTAGCATGGG 41083 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||||| |||||| | || | ||||| || ||| | ||| ||||||||||| Sbjct 41084 ATAATATCATAGGATTT-CGATCCTATTGTGCTGGCCTTCGGGATTAGAGTAATGATTAA 41142 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| |||| |||| | ||||| || |||||||||||||||||||||||||| | Sbjct 41143 GAGGGACAGTCAGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 41202 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||| ||| |||| |||||| || |||||||||||||||||||| | || ||||||| Sbjct 41203 AGATGAACCACTGTGAAAGCATTTGCCAAGGATGTTTTCATTAATTA-AAAATGAAAGTT 41261 Score = 104 bits (114), Expect = 4e-20 Identities = 103/131 (79%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| |||| | |||||||||||||| Sbjct 104398 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCACGCTCTGGATACATTAGCATGGG 104457 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| |||||| | ||| | ||||||||||| Sbjct 104458 ATAACATCATAGGA-TTTCGGTCCTATTGTGTTGGCCTTCGGGATCAGAGTAATGATTAA 104516 Query 194 TAGGGATAGTC 204 ||||| |||| Sbjct 104517 GAGGGACAGTC 104527 >seq2908 Length=48135 Score = 179 bits (198), Expect = 7e-43 Identities = 186/240 (78%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| |||| | |||||||||||||| Sbjct 16491 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCACGCTCTGGATACATTAGCATGGG 16550 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||||| | |||| | |||| || || || ||| | |||| ||||||||||| Sbjct 16551 ATAATATCACAGGATTT-CGGTCCTGTTGTGCTGGCCTTCAGGATTAGAGTAATGATTAA 16609 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| |||| ||| | ||||| || |||||||||||||||||| ||||||| | Sbjct 16610 GAGGGACAGTCAGGGTCATTCGTATTTCATAGTCAGAGGTGAAATTCTTAGATTTATGAA 16669 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| |||| |||||| || |||||||| ||||||||||| | || ||||||| Sbjct 16670 AGACGAACCACTGTGAAAGCATTTGCCAAGGATATTTTCATTAATTA-AAAATGAAAGTT 16728 >seq5 Length=51955539 Score = 161 bits (178), Expect = 2e-37 Identities = 187/244 (77%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAGCATG 131 |||||||||| |||||||| ||||||||||| ||| || | | ||||||||||||| Sbjct 21409179 TTACTTTGAAGAAATTAGAATGTTCAAAGCAAGCCCACATT--TTGGATACATTAGCATG 21409122 Query 132 GAATAATAGAATAGGACGTGCGGTTCT-ATTTTGTTGGT-TTCTAGGACCGCCGTAATGA 189 | |||| || |||||| | ||| || ||| |||||| ||| || | | ||||||| Sbjct 21409121 GGATAACAGTATAGGATTTT-GGTCCTTATTGTGTTGGCATTCGAGATCAGA-GTAATGA 21409064 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| |||||||| | ||| | ||||| || ||||||||||||||||||||||||| Sbjct 21409063 TTAAGAGGGATAGCCAGGGACATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 21409004 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | || || ||| ||| ||||| || | ||| ||||||| |||||||| |||| || Sbjct 21409003 TAAAAAACGAACCACTATGAAAGTATTTGCTAAGAATGTTTTTATTAATCA-AGAACAAA 21408945 Query 310 AGTT 313 |||| Sbjct 21408944 AGTT 21408941 >seq12966 Length=4046 Score = 143 bits (158), Expect = 5e-32 Identities = 185/248 (75%), Gaps = 8/248 (3%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 ||| |||||| | ||||||||| |||||| | || ||| ||||| |||||||| | Sbjct 2274 TTATTTTGAAGATATTAGAGTGCTCAAAGAAACCCACA-CTCTGAATATATTAGCATAGG 2332 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||| | | | | ||||| || ||| | ||| || ||||||||| | Sbjct 2333 ATAACATCATAGAATTTT-GATCCTATTGTGCTGGCCTTCGGGATCGGAGTAATGATTCA 2391 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT-- 251 ||||||||||||||| | ||||| || ||||||| |||||| |||||||||||| Sbjct 2392 GAGGGATAGTCGGGGGCATTTGTATTTCATAGTCAGAGATGAAATCCTTGGATTTATTAT 2451 Query 252 -GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| | |||||||| | |||||||| ||||||||||||| ||| |||| Sbjct 2452 GAAAGACAAACCATAGCGAAAGCACTTGCCAAGGATATTTTCATTAATCA-AGAATGAAA 2510 Query 311 GTT-AGGG 317 ||| |||| Sbjct 2511 GTTGAGGG 2518 >seq1766 Length=104952 Score = 113 bits (124), Expect = 8e-23 Identities = 108/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| |||| | |||||||||||||| Sbjct 104797 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCACGCTCTGGATACATTAGCATGGG 104856 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | | |||| | |||| ||||| |||||| | ||| || ||||||||||| Sbjct 104857 ATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAA 104915 Query 194 TAGGGATAGTCGGGGG 209 ||||| ||||||||| Sbjct 104916 GAGGGACAGTCGGGGG 104931 >seq1 Length=68435666 Score = 107 bits (118), Expect = 4e-21 Identities = 172/243 (71%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAA-TACATTAGCATGGA 133 |||||||||| ||||||||||| || ||||| | ||| || || ||| |||| | Sbjct 68164446 TTACTTTGAAGAAATTAGAGTGCTCGAAGCAAGAACACTCTCTAAATATATTCGCATAGG 68164387 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | | | |||| |||||| | | | || |||||||||| Sbjct 68164386 ATAACATCATAGGATTT-CAATCTTATTGTGTTGGCCTTCAAAATCGGAGTAATGATTAG 68164328 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| | | ||| | | || | ||| || |||||||||||||||||| | Sbjct 68164327 AAGGGACAAACAGGGACATTCATGTTTCACAATCAAAGATGAAATTCTTGGATTTATGAA 68164268 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||||| || |||||| || |||||||| |||| |||| ||| ||| ||||||| Sbjct 68164267 AGACAAACTATTGTGAAAGCATTTGCCAAGGATATTTTTATTACTCA-AGAATGAAAGTT 68164209 Query 314 AGG 316 || Sbjct 68164208 GGG 68164206 >seq4 Length=57251647 Score = 102 bits (112), Expect = 1e-19 Identities = 166/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAA-TACATT 125 ||| | | ||||||| || |||||||| || |||| | | |||| | | || ||||| Sbjct 11266821 CAGCATTATTACTTTAAAGAAATTAGAATGATCAATGTAAGCCTGTATTTTAAATACATC 11266762 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 185 |||| | |||| | | |||| | | || ||| | | || || | | || | ||| Sbjct 11266761 AGCACGAGATAACATCACAGGATTT-CAGTCCTACTATATTAGTCTTTGAGATTGGAGTA 11266703 Query 186 ATGATTAATAGGGATAGTCGGG-GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 |||||||| || |||||| | || || ||||| || |||||||||||||||||||| Sbjct 11266702 ATGATTAAGAGAAATAGTCAAGAGGAATC-GTATTTTATAGTCAGAGGTGAAATTCTTGG 11266644 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 |||| | |||| ||| || | |||| || | |||||| ||||||||||| Sbjct 11266643 ATTTGTGAAAGATGAACCCCTACAAAAGTATTTTCTAAGGATATTTTCATTAAT 11266590 >seq12 Length=28800575 Score = 77.0 bits (84), Expect = 6e-12 Identities = 96/129 (74%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACAT 124 |||| | | ||||||| || ||||||||||| |||||||| || |||| | |||||| Sbjct 27051734 CCAGCATTGTTACTTTAAAGAAATTAGAGTGCTCAAAGCAAACCCACGCTCTGGATACAT 27051675 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||| |||| | |||||| | || | ||||| ||| || | |||| || || Sbjct 27051674 AAGCATGGGATAACATTATAGGA-TTTCGATCCTATTGTGTCGGCCTTCAGGATCGGAGT 27051616 Query 185 AATGATTAA 193 |||||| || Sbjct 27051615 AATGATCAA 27051607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914833361728