Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13]
40,061 sequences; 1,535,178,229 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq40061 230 6e-58
seq1093 125 2e-26
seq5 114 3e-23
seq46 87.8 5e-15
>seq40061
Length=156973
Score = 230 bits (254), Expect = 6e-58
Identities = 297/409 (73%), Gaps = 2/409 (0%)
Strand=Plus/Plus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| |||
Sbjct 102796 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 102855
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | |||||||||||||| | ||| || | | ||| | | ||
Sbjct 102856 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 102915
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
||||||| ||||| |||| ||| || | | ||| | || |||| | ||
Sbjct 102916 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 102975
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||| | ||| ||| |||||||||||||| || | | ||||||||| ||
Sbjct 102976 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 103035
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||| ||| | ||||| |||||||| || | |||||||| |||||||||| |
Sbjct 103036 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGG 103095
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362
|||||||||||| ||||||| ||| |||||||| ||||| | || | | |
Sbjct 103096 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 103155
Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|| || || ||||||||||||| |||| ||||||||||| |||
Sbjct 103156 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 103204
Score = 230 bits (254), Expect = 6e-58
Identities = 297/409 (73%), Gaps = 2/409 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| |||
Sbjct 139370 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 139311
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | |||||||||||||| | ||| || | | ||| | | ||
Sbjct 139310 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 139251
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
||||||| ||||| |||| ||| || | | ||| | || |||| | ||
Sbjct 139250 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 139191
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||| | ||| ||| |||||||||||||| || | | ||||||||| ||
Sbjct 139190 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 139131
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||| ||| | ||||| |||||||| || | |||||||| |||||||||| |
Sbjct 139130 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGG 139071
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362
|||||||||||| ||||||| ||| |||||||| ||||| | || | | |
Sbjct 139070 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 139011
Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|| || || ||||||||||||| |||| ||||||||||| |||
Sbjct 139010 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 138962
>seq1093
Length=159761
Score = 125 bits (138), Expect = 2e-26
Identities = 227/331 (69%), Gaps = 1/331 (0%)
Strand=Plus/Minus
Query 7 TGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGC 66
||| ||||||||| ||||||||| ||| | |||| ||||| || ||| |||||||
Sbjct 20501 TGAGGAATAAGCATCGGCTAACTCTATGCTAATAGCCATGGTAAGACAGAGGATGCAAGC 20442
Query 67 GTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAA 126
||| |||| | |||||||||||||| | ||| || | | ||| | | | |||
Sbjct 20441 ATTATCTAGAATAATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCTGCCATCAAA 20382
Query 127 TCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGG 186
||| ||||| |||| ||| || | | ||| | || |||| | || ||
Sbjct 20381 TCCA-GGGCTCAACCCTGGACAGGCGATGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 20323
Query 187 GGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAA 246
| |||| ||| ||||||| |||||||||| || | ||| ||||| || |||
Sbjct 20322 GAGAAAATTTTTGGTGGAGCAGTGGAATGCGTAGAGATTGAAAAGAATACCAACGGTGAA 20263
Query 247 GGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATT 306
||| | ||||| ||||||| || | |||||||| |||||||||| |||||
Sbjct 20262 AGCACTCTACTGGGCCGACACTGATACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 20203
Query 307 AGATACCCTGGTAGTCCACGCCCTAAACGAT 337
|||||||| ||||||| | | ||||||||
Sbjct 20202 AGATACCCCAGTAGTCCTAGTCGTAAACGAT 20172
>seq5
Length=51955539
Score = 114 bits (126), Expect = 3e-23
Identities = 128/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226
||| ||| | | |||||| | ||||| || | |||||| ||||||| ||||||||
Sbjct 1530681 ACTTGAGCGAGACAGAGGAGAGTGGAGTTTCGTGTGTAGGGGTGAAATCTGTAGATATAC 1530622
Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286
| |||||| |||| || |||||||| | ||||| || || ||| | | ||||
Sbjct 1530621 GAAGGAACGCCAAAAGCAAAGGCAGCTCTCTGGGTCCCTACCGATGCTGTGGTGCAAAAG 1530562
Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
| |||||||| || ||||||||||||| || ||||||| ||| ||||||||
Sbjct 1530561 CATGGGGAGCGAATAGGATTAGATACCTTGATAGTCCATGCCATAAACGAT 1530511
Score = 114 bits (126), Expect = 3e-23
Identities = 229/336 (68%), Gaps = 15/336 (4%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| |||| |||||| | ||||||| | ||||||||||||| |||| || | | |||
Sbjct 9510475 TATCTGAGAAATAAGTATCGGCTAATTCTGTGCCAGCAGCCGTAGTAAGACAGAAGATGC 9510416
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| || ||| | |||||||||||||| | ||| | | | |||| | | ||
Sbjct 9510415 AAGCGTTATCCGAAATGATTGGGCGTAAAGCGTCTGTAGGTGACTTTTTAAGTCCGCCGT 9510356
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGT-GTGTCAG 181
|||||| || | || | | | | | || || || ||| | | |||
Sbjct 9510355 CAAATCC-------TAGACAGGTGGTGGAAACTACCAA-GCTGGAGTAAAGTAGGGGCAG 9510304
Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241
|| | | ||| | || ||| |||||| |||||| || | | ||||||||| |
Sbjct 9510303 AGAGAATT----TTCGA--TGGAGCGATGAAATACGTAGAGATCGGAAAGAACACCAACG 9510250
Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301
||||| ||| | |||| |||||||| | | |||||||| |||||||||| |
Sbjct 9510249 GCGAAAGCACTCTGCTGGATCGACACTGACACGGAGAGACGAAAGCTAGGGGAGCAAATA 9510190
Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
||||||||||||| |||||| ||| ||||||||
Sbjct 9510189 GGATTAGATACCCCAGTAGTCATAGCCGTAAACGAT 9510154
>seq46
Length=1555977
Score = 87.8 bits (96), Expect = 5e-15
Identities = 228/342 (67%), Gaps = 17/342 (5%)
Strand=Plus/Plus
Query 4 ACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC---GTAGGGT 60
|| ||| ||| |||| |||||||||| | ||| |||||||||| | | | | |||
Sbjct 381778 ACTTGAGGAAGAAGCCCCGGCTAACTCCATGCTAGCAGCCGCGATTAGATCGGGGGGGGG 381837
Query 61 GCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT----TGTGTAAGAC 116
||||| ||| ||||||| |||||| ||||| | | ||||||| || || ||
Sbjct 381838 GCAAGTGTTCTTCGGAATGACTGGGTGTAAAAGGCACATAGGCGGTGAATTGGGTT-GAA 381896
Query 117 AGGTGTGAAA-TCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTG 175
|| |||| || | |||| | | ||| | | ||| ||| |||||
Sbjct 381897 AG---TGAATGTCATCAA---TAACTAACGGAGTGCTCTCGAAACTAATTCACTTGAGTG 381950
Query 176 TGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACA 235
| |||| | ||| |||| |||||| || |||| | ||||| | ||||||
Sbjct 381951 AGATGGAGGAGAGTGAAATTGT--GTGTAGGGGTAAAATCCATAGATCTACAAAGGAACG 382008
Query 236 CCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAG 295
|||| | ||||| ||| | ||||| || || ||| | ||||||| |||||||
Sbjct 382009 CCAAAAGTGAAGGGAGCTCTCTGGGTCCCTACAGATGCTTGGGTGCGAAAGCATGGGGAG 382068
Query 296 CAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
|||||||||||||||||| ||| |||| | | |||| |||
Sbjct 382069 TGAACAGGATTAGATACCCTAGTAATCCATGTCGTAAATGAT 382110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1289083373344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |