Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq40061 230 6e-58 seq1093 125 2e-26 seq5 114 3e-23 seq46 87.8 5e-15 >seq40061 Length=156973 Score = 230 bits (254), Expect = 6e-58 Identities = 297/409 (73%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 102796 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 102855 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | ||| | | || Sbjct 102856 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 102915 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 102916 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 102975 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 102976 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 103035 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| |||||||||| | Sbjct 103036 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGG 103095 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 103096 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 103155 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 103156 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 103204 Score = 230 bits (254), Expect = 6e-58 Identities = 297/409 (73%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 139370 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 139311 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | ||| | | || Sbjct 139310 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 139251 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 139250 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 139191 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 139190 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 139131 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| |||||||||| | Sbjct 139130 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGG 139071 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 139070 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 139011 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 139010 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 138962 >seq1093 Length=159761 Score = 125 bits (138), Expect = 2e-26 Identities = 227/331 (69%), Gaps = 1/331 (0%) Strand=Plus/Minus Query 7 TGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGC 66 ||| ||||||||| ||||||||| ||| | |||| ||||| || ||| ||||||| Sbjct 20501 TGAGGAATAAGCATCGGCTAACTCTATGCTAATAGCCATGGTAAGACAGAGGATGCAAGC 20442 Query 67 GTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAA 126 ||| |||| | |||||||||||||| | ||| || | | ||| | | | ||| Sbjct 20441 ATTATCTAGAATAATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCTGCCATCAAA 20382 Query 127 TCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGG 186 ||| ||||| |||| ||| || | | ||| | || |||| | || || Sbjct 20381 TCCA-GGGCTCAACCCTGGACAGGCGATGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 20323 Query 187 GGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAA 246 | |||| ||| ||||||| |||||||||| || | ||| ||||| || ||| Sbjct 20322 GAGAAAATTTTTGGTGGAGCAGTGGAATGCGTAGAGATTGAAAAGAATACCAACGGTGAA 20263 Query 247 GGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATT 306 ||| | ||||| ||||||| || | |||||||| |||||||||| ||||| Sbjct 20262 AGCACTCTACTGGGCCGACACTGATACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 20203 Query 307 AGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||| ||||||| | | |||||||| Sbjct 20202 AGATACCCCAGTAGTCCTAGTCGTAAACGAT 20172 >seq5 Length=51955539 Score = 114 bits (126), Expect = 3e-23 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226 ||| ||| | | |||||| | ||||| || | |||||| ||||||| |||||||| Sbjct 1530681 ACTTGAGCGAGACAGAGGAGAGTGGAGTTTCGTGTGTAGGGGTGAAATCTGTAGATATAC 1530622 Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286 | |||||| |||| || |||||||| | ||||| || || ||| | | |||| Sbjct 1530621 GAAGGAACGCCAAAAGCAAAGGCAGCTCTCTGGGTCCCTACCGATGCTGTGGTGCAAAAG 1530562 Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 | |||||||| || ||||||||||||| || ||||||| ||| |||||||| Sbjct 1530561 CATGGGGAGCGAATAGGATTAGATACCTTGATAGTCCATGCCATAAACGAT 1530511 Score = 114 bits (126), Expect = 3e-23 Identities = 229/336 (68%), Gaps = 15/336 (4%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| |||||| | ||||||| | ||||||||||||| |||| || | | ||| Sbjct 9510475 TATCTGAGAAATAAGTATCGGCTAATTCTGTGCCAGCAGCCGTAGTAAGACAGAAGATGC 9510416 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| || ||| | |||||||||||||| | ||| | | | |||| | | || Sbjct 9510415 AAGCGTTATCCGAAATGATTGGGCGTAAAGCGTCTGTAGGTGACTTTTTAAGTCCGCCGT 9510356 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGT-GTGTCAG 181 |||||| || | || | | | | | || || || ||| | | ||| Sbjct 9510355 CAAATCC-------TAGACAGGTGGTGGAAACTACCAA-GCTGGAGTAAAGTAGGGGCAG 9510304 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 || | | ||| | || ||| |||||| |||||| || | | ||||||||| | Sbjct 9510303 AGAGAATT----TTCGA--TGGAGCGATGAAATACGTAGAGATCGGAAAGAACACCAACG 9510250 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 ||||| ||| | |||| |||||||| | | |||||||| |||||||||| | Sbjct 9510249 GCGAAAGCACTCTGCTGGATCGACACTGACACGGAGAGACGAAAGCTAGGGGAGCAAATA 9510190 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||| |||||| ||| |||||||| Sbjct 9510189 GGATTAGATACCCCAGTAGTCATAGCCGTAAACGAT 9510154 >seq46 Length=1555977 Score = 87.8 bits (96), Expect = 5e-15 Identities = 228/342 (67%), Gaps = 17/342 (5%) Strand=Plus/Plus Query 4 ACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC---GTAGGGT 60 || ||| ||| |||| |||||||||| | ||| |||||||||| | | | | ||| Sbjct 381778 ACTTGAGGAAGAAGCCCCGGCTAACTCCATGCTAGCAGCCGCGATTAGATCGGGGGGGGG 381837 Query 61 GCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT----TGTGTAAGAC 116 ||||| ||| ||||||| |||||| ||||| | | ||||||| || || || Sbjct 381838 GCAAGTGTTCTTCGGAATGACTGGGTGTAAAAGGCACATAGGCGGTGAATTGGGTT-GAA 381896 Query 117 AGGTGTGAAA-TCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTG 175 || |||| || | |||| | | ||| | | ||| ||| ||||| Sbjct 381897 AG---TGAATGTCATCAA---TAACTAACGGAGTGCTCTCGAAACTAATTCACTTGAGTG 381950 Query 176 TGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACA 235 | |||| | ||| |||| |||||| || |||| | ||||| | |||||| Sbjct 381951 AGATGGAGGAGAGTGAAATTGT--GTGTAGGGGTAAAATCCATAGATCTACAAAGGAACG 382008 Query 236 CCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAG 295 |||| | ||||| ||| | ||||| || || ||| | ||||||| ||||||| Sbjct 382009 CCAAAAGTGAAGGGAGCTCTCTGGGTCCCTACAGATGCTTGGGTGCGAAAGCATGGGGAG 382068 Query 296 CAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||||||| ||| |||| | | |||| ||| Sbjct 382069 TGAACAGGATTAGATACCCTAGTAATCCATGTCGTAAATGAT 382110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289083373344