Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq40061 141 1e-31 seq15 141 1e-31 seq2 96.9 5e-18 seq1 80.6 4e-13 seq10 77.0 5e-12 seq1623 73.4 5e-11 >seq40061 Length=156973 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 108127 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 108069 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 108068 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 108022 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 108021 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 107968 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 107967 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 107908 Query 246 GTA 248 ||| Sbjct 107907 GTA 107905 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 134039 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 134097 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 134098 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 134144 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 134145 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 134198 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 134199 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 134258 Query 246 GTA 248 ||| Sbjct 134259 GTA 134261 >seq15 Length=24314465 Score = 141 bits (156), Expect = 1e-31 Identities = 180/244 (74%), Gaps = 13/244 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||| ||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 8530361 CCTTCCAGCACCGAGCAGGTGTCAGACTTTATACATCGTGTTACCA-CTTAGCAGAGTCC 8530419 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||| ||| ||| ||| | | ||| || | | | |||| | Sbjct 8530420 GGTGTTTTTAATAAACAGTTGCTACCCCCTAGTATGTGCTACTTTCCCAA--TCAAAAGA 8530477 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||| ||||||| ||| ||||||| ||| ||||| Sbjct 8530478 T--------AGGAGAG-CACCCCTTCTCCCAAAGTTACAGGGTCATTTTGTCGAGTTCCT 8530528 Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 | | || |||| | ||| |||| |||||| |||||| || ||||||||||||||| Sbjct 8530529 TCAACATGGTTCTCTCGATGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGG 8530588 Query 245 GGTA 248 |||| Sbjct 8530589 GGTA 8530592 >seq2 Length=65558141 Score = 96.9 bits (106), Expect = 5e-18 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||| | ||||||| ||||| |||||||| | |||||||| | |||| | Sbjct 6512090 GGCACCCCTTCTTCTGAAGTTATGGGGCTATTTTGCCTAGTTCCTTAAAAAGAGTTATCT 6512149 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| |||||||||||||| |||||||||| | ||| |||| Sbjct 6512150 CGTGCCCCTAAGTATTCTCTACCTACCCACCTGTGTTGATTTCGGGTA 6512197 Score = 75.2 bits (82), Expect = 2e-11 Identities = 76/97 (78%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 147 CCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACG 206 ||||||| ||||||| ||||| |||||| || |||||||| | |||| | | || Sbjct 56796438 CCTTCTCTCGAAGTTGTGGGGCTATTTTGTTGAGTTCCTTAAAGAGAGTTGTCTC--ACT 56796495 Query 207 CCTTAG-TATTCTCTACCTGACCACCTGTGTCGGTTT 242 |||||| |||||||||||| | || ||||||||||| Sbjct 56796496 CCTTAGATATTCTCTACCTATCTACTTGTGTCGGTTT 56796532 >seq1 Length=68435666 Score = 80.6 bits (88), Expect = 4e-13 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 || |||||||||| |||||||||||||| ||||| |||| ||||||| | |||| | Sbjct 18252465 GGTACCCCTTCTCTCGAAGTTACGGGGCTATTTTACCGAGTTCCTTAGAGAGAGTTGTCT 18252524 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGT 234 || | ||| ||||||||||||| ||||||| Sbjct 18252525 CGCGCCCCTAGGTATTCTCTACCTACTCACCTGT 18252558 >seq10 Length=31890735 Score = 77.0 bits (84), Expect = 5e-12 Identities = 45/47 (96%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 |||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 30310507 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 30310553 >seq1623 Length=113977 Score = 73.4 bits (80), Expect = 5e-11 Identities = 43/45 (96%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 104817 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTT 104773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694130509653