Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2260 282 7e-74 seq1607 266 5e-69 seq2908 246 5e-63 seq25041 235 9e-60 seq9 199 6e-49 seq12966 187 4e-45 seq5 176 7e-42 seq1 132 8e-29 seq6 105 1e-20 seq4 91.5 2e-16 seq2 87.8 3e-15 seq14 78.8 1e-12 >seq2260 Length=73924 Score = 282 bits (312), Expect = 7e-74 Identities = 221/261 (85%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 64326 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAGA 64385 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || ||| | |||||||||||||||||| || Sbjct 64386 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTGTCC 64445 Query 122 ACCAACCATAG---TCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 | | | ||| || | ||| |||||||| | ||||||||||||||| ||||| Sbjct 64446 ATGGAGGGATGCCTTCGCATAG--CTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 64503 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 64504 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCTATGCACCACCACCCATAGAATCA 64563 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| ||| || Sbjct 64564 AGAAAGAGCTCTCAGTCTATC 64584 Score = 277 bits (306), Expect = 3e-72 Identities = 221/261 (85%), Gaps = 9/261 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 5316 ACTCGTTGAATACATCAGTGTAGCGCACGTGC---CCAGAACATCTAAGGGCATCACAGA 5372 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||||| | || |||| | ||||||||||||||||| Sbjct 5373 CCTGTTATTGCCTCAAACTTCCATAGCCT--AAGCGACCATAGTCCCTCTAAGAAGTTGT 5430 Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 |||| | ||| || |||| |||||||| ||||||||||||||||| ||||| Sbjct 5431 CCACGGAGGGATAACTCCGCATAGCTAGTTAGCAGGCTAAGGTCTCGTTCGTTAACGGAA 5490 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 5491 TTAACCAGACAAATCGCTCCACCAACTAAGAATGGCCATGCACCACCACCCATAGAATCA 5550 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 5551 AGAAAGAGCTCTCAGTCTGTC 5571 >seq1607 Length=110441 Score = 266 bits (294), Expect = 5e-69 Identities = 217/260 (83%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||| || ||||||||||||||||||| |||||||||||| Sbjct 41770 ACTCGTTGAATACATCAGTGTAGCACGTGTGCGGCCCAGAACATCTACGGGCATCACAGA 41711 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTG-GAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||| ||||||||||||||||| | | || | ||||| ||||||||||||||||| | | Sbjct 41710 CCTATTATTGCCTCAAACTTCTGTGGCCTAAGCAGCCA-TAGTCCCTCTAAGAAGCTATC 41652 Query 121 CACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 ||| | | | || |||| |||||||| ||||||||||||||||| |||| Sbjct 41651 CACAGAGGGATGCCTCTGCAAAGCTAGTTAGCAGGCTAAGGTCTCGTTCGTTAATAGAAT 41592 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 41591 TAACCAGATAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 41532 Query 239 GAAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 41531 AAAAGAGCTCTCAGTCTGTC 41512 >seq2908 Length=48135 Score = 246 bits (272), Expect = 5e-63 Identities = 213/261 (82%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 17237 ACTCGTTGAATACATCAGTGTAGCGCGTGTGCGGCCCAGAACATCTACGGGCATCACAGA 17178 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 ||| |||||||||||||||| | | || |||| | |||||| ||||||||||| Sbjct 17177 CCTATTATTGCCTCAAACTTTTGTGGCCT--AAGCGGCCATAGTCTCTCTAAGAAGCTGT 17120 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 |||| | | | || |||| |||||||| ||||||||||||||||| ||| Sbjct 17119 CCACAGAGGGATGCCTCTGCAAAGCTAGTTAGCAGGCTAAGGTCTCGTTCGTTAATAGAA 17060 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 17059 TTAACCAGATAAATCGCTCCACCAACTAAGAATGGCCATGCACCACCACCCATAGAATCA 17000 Query 238 AGAAAGAGCTATCAATCTGTC 258 | ||||||| ||| |||||| Sbjct 16999 AAAAAGAGCGCTCAGTCTGTC 16979 >seq25041 Length=5667 Score = 235 bits (260), Expect = 9e-60 Identities = 222/285 (78%), Gaps = 30/285 (11%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 5148 ACTCGTTGAATACATCAGTGTAGCGCACGTGCGGCCCAGAACATCTAAGGGCATCACAAA 5207 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||||| | || |||| | |||||||||||||||||| Sbjct 5208 CCTGTTATTGCCTCAAACTTCCATGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGT 5265 Query 120 CCA-CCAACCAT-AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 ||| | || || |||| |||||||| | ||||||||||||||| ||||| Sbjct 5266 CCATGGAGGGATGCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 5325 Query 178 TTAACCAGACAAATC------------------------ACTCCACCAACTAAGAACGGC 213 ||||||||||||||| |||||||||||||||||||| Sbjct 5326 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCTCCACCAACTAAGAACGGC 5385 Query 214 CATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 5386 CATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 5430 >seq9 Length=38056896 Score = 199 bits (220), Expect = 6e-49 Identities = 191/245 (78%), Gaps = 15/245 (6%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||| ||||||||||||||| |||||||||||||||| || | ||||| ||| Sbjct 21199325 TCACTGTAGCATGCGTGCGGCCCAGAATATCTAAGGGCATCACAAACTTATTATTATCTC 21199266 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 |||||||||| | || | | || |||||||||| |||| |||| | | Sbjct 21199265 AAACTTCCATGGCCTAAGTGGCCATGGTCCCTCTAAAAAGCTGGCCA----------TGG 21199216 Query 136 ATGG--GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | || | ||| ||| || ||| ||||||||| ||| ||||||||||||| |||||| Sbjct 21199215 AGGGATGCCTAGTTACCAAGTTGAGGTCTCGTCTATTAATGGAATTAACCAGATAAATCA 21199156 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 ||||||||||||||||| |||||||||||||||| ||||||||||| ||||| ||| | Sbjct 21199155 CTCCACCAACTAAGAACAGCCATGCACCACCACCTATAGAATCAAG---GAGCTCTCAGT 21199099 Query 254 CTGTC 258 || || Sbjct 21199098 CTATC 21199094 Score = 183 bits (202), Expect = 5e-44 Identities = 187/243 (77%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||| ||||||||||||||| |||||||||||||||| || | ||||| ||| Sbjct 21162641 TCACTGTAGCATGCGTGCGGCCCAGAATATCTAAGGGCATCACAAACTTATTATTATCTC 21162582 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 |||||||||| | || | | || || |||||| |||| | ||| | | Sbjct 21162581 AAACTTCCATGGCCTAAGTGGCCATGGTTTCTCTAAAAAGCTTGTCACGGAGG------G 21162528 Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 ||| ||| ||| || ||| ||||||||| ||| ||||||||||||| |||||||| Sbjct 21162527 ATGC--CTAATTACCAAGTTGAGGTCTCGTCTATTAATGGAATTAACCAGATAAATCACT 21162470 Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||||||||||||| |||||||||||||||| ||||||||||| ||||| ||| ||| Sbjct 21162469 CCACCAACTAAGAATAGCCATGCACCACCACCTATAGAATCAAG---GAGCTCTCAGTCT 21162413 Query 256 GTC 258 || Sbjct 21162412 ATC 21162410 >seq12966 Length=4046 Score = 187 bits (206), Expect = 4e-45 Identities = 189/243 (78%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||| ||||||||||||||| ||||||||| |||||| || | ||||| ||| Sbjct 2995 TCACTGTAGCATGCGTGCGGCCCAGAATATCTAAGGGTATCACAAACTTATTATTATCTC 2936 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 |||||||||| | || | | || |||||||||| ||| ||||| | || | Sbjct 2935 AAACTTCCATGGCCTAAGTGGCCATGGTCCCTCTAAAAAGTTGGCCAC-----AGAGG-G 2882 Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 ||| ||| ||| || ||| ||||||||| ||| |||||||| |||| |||||||| Sbjct 2881 ATGC--CTAGTTACCAAGTTGAGGTCTCGTCTATTAATGGAATTAATCAGATAAATCACT 2824 Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||||| ||||||| |||||||||||||||| ||||||||||| ||||| ||||||| Sbjct 2823 CCACCAGTTAAGAACAGCCATGCACCACCACCTATAGAATCAAG---GAGCTCTCAATCT 2767 Query 256 GTC 258 || Sbjct 2766 ATC 2764 >seq5 Length=51955539 Score = 176 bits (194), Expect = 7e-42 Identities = 193/256 (75%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||| || ||| ||| || ||||| |||| |||||||||| Sbjct 21408435 ACTCGTTGAATACATCAGTGTAGCACGTGTGTGGCTCACAACATTTAAGAGCATCACAGA 21408494 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||| ||||||||||||||||||| | || | | ||||| ||||||||||| || Sbjct 21408495 CCTATTATTGCCTCAAACTTCCAAGGCCTAAGTGGCCATAGTTCCTCTAAGAAGTTGGCT 21408554 Query 122 ACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | | || |||| ||| || | ||| |||| ||| ||| |||||| Sbjct 21408555 GTGGAGGGATGCCTCTGCATAGCTAGTTAACAAGCCAAGATCTCATTCATTAATGGAATT 21408614 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || |||||||||| |||||||||||| ||| |||||||||||||||||||||||| Sbjct 21408615 AATCAGACAAATCGCTCCACCAACTAGGAATAAGCATGCACCACCACCCATAGAATCATA 21408674 Query 240 AAAGAGCTATCAATCT 255 |||||||| ||||||| Sbjct 21408675 AAAGAGCTCTCAATCT 21408690 >seq1 Length=68435666 Score = 132 bits (146), Expect = 8e-29 Identities = 101/118 (86%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||||||| ||||||| || |||| ||||||| |||||||| |||||||| Sbjct 68163841 GCTAGTTAGCAGGTTGAGGTCTCATTTGTTAATAAAATTAACTAGACAAATGACTCCACC 68163900 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| |||||||||| ||||| |||||||||||||| ||||||| || Sbjct 68163901 AACTAAGAACGGCTGTGCACCACCATTCATAG-ATCAAGAAAGAGCTCTCAATCTATC 68163957 >seq6 Length=44357769 Score = 105 bits (116), Expect = 1e-20 Identities = 142/193 (74%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 34 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGA 93 ||| || |||||||| |||||||||||| |||||| || |||||||||| | | || | Sbjct 26699995 GGCTCAAAACATCTAGGGGCATCACAGATCTGTTACTGTCTCAAACTTCTGTGGCCTTAA 26700054 Query 94 --AGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG--TCGATGGGGCTATTTAG 149 ||||| |||| ||||||||| | || | | | || | ||| ||| Sbjct 26700055 GCAGCCA-TAGTTCCTCTAAGA-GTTGGCTGCGGATGGATGCCTCCACATAACTAGCTAG 26700112 Query 150 CAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAA 209 ||||| |||| | ||| |||| |||||||||| || |||||||||||||||||||||| Sbjct 26700113 TAGGTTGAGGTTTTGTTAGTTAACGGAATTAACTGGATAAATCACTCCACCAACTAAGAA 26700172 Query 210 CGGCCATGCACCA 222 |||||||||| Sbjct 26700173 TAACCATGCACCA 26700185 >seq4 Length=57251647 Score = 91.5 bits (100), Expect = 2e-16 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||| ||||||| | |||||| || | | ||||||||||||| ||| |||||| ||| Sbjct 11266255 TATATAGCAGGATGAGGTCTTATTTATCAATGGAATTAACCAGATAAAATACTCCATCAA 11266314 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 |||| ||||| ||| |||| |||||||||||||| ||||| || || Sbjct 11266315 CTAATAACGGTTTTGCGCCACTACCCATAGAATCAAAAAAGAACTCTC 11266362 >seq2 Length=65558141 Score = 87.8 bits (96), Expect = 3e-15 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 ||||||||| |||||||| |||||| ||||||||||||||||||||||||||| ||| || Sbjct 64490536 ACAAATCACACCACCAACAAAGAACAGCCATGCACCACCACCCATAGAATCAAAAAAAAG 64490477 Query 246 C 246 | Sbjct 64490476 C 64490476 >seq14 Length=24379743 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||| ||||||| | |||||||||||||||||||| || ||||||||| || Sbjct 18252923 CAATGTAGCGCGCATGCGGCCTAAAACATCTAAGGGCATCACAGGCCAGTTATTGCCGCA 18252864 Query 77 A 77 | Sbjct 18252863 A 18252863 Score = 75.2 bits (82), Expect = 2e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||| | | ||||||||| ||||| ||||||||||||| | Sbjct 18329390 ACTCGTTGAATGCATCAGTGTAGTGTGTATGCGGCCCAAAACATTTAAGGGCATCACATA 18329331 Query 62 CCTGTTATTGCCTCAA 77 || |||||||||||| Sbjct 18329330 CCAATTATTGCCTCAA 18329315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796490769141