Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq40061 187 5e-45 seq369 141 2e-31 seq13 141 2e-31 seq6 107 4e-21 seq50 98.7 2e-18 >seq40061 Length=156973 Score = 187 bits (206), Expect = 5e-45 Identities = 181/230 (79%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 108506 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 108565 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | | ||| ||| | || | | |||||||||||| ||||| Sbjct 108566 GTGCAAAGGTTTCCTCGGGTCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 108624 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 108625 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 108684 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 108685 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 108734 Score = 187 bits (206), Expect = 5e-45 Identities = 181/230 (79%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 133660 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 133601 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | | ||| ||| | || | | |||||||||||| ||||| Sbjct 133600 GTGCAAAGGTTTCCTCGGGTCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 133542 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 133541 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 133482 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 133481 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 133432 >seq369 Length=445541 Score = 141 bits (156), Expect = 2e-31 Identities = 174/233 (75%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 109 ACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAG 168 |||||||| | |||| | || ||| ||||||| |||||||||||| |||||||| Sbjct 264210 ACGGGACAATCTCAGGTAGACAATTTCTATGGGGCGTAGGCCTCCCAAAGA-TAACGGAG 264268 Query 169 GCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATG-CGCAC-AGTGCAAAGGCAAAAG 226 || ||||||| |||||| | |||| || | || | | | |||||||||||||||| Sbjct 264269 GCATGCAAAGATTTCCTCAGATCGGATCGAGAT--TGACCCTCGAGTGCAAAGGCAAAAG 264326 Query 227 GGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGG 286 || | |||||||| | |||| | | || || ||| ||||| || |||| ||||||| Sbjct 264327 GGAGCTTGACTGCAAAACCCACCAATCGAGTGAAGACAAAAGTTGGCCTTAGTGATCCGA 264386 Query 287 CGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || | ||| ||||||||||| | |||||||| ||| || ||||| Sbjct 264387 CGGTGTCGAGTAGAAAGGCCGTCGCTCCATAGATAAAAGTTACTCTAAGGATA 264439 >seq13 Length=27817470 Score = 141 bits (156), Expect = 2e-31 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| | || | |||||| |||||| |||||||||| ||||| |||||| Sbjct 25908659 GGGACAGTCTTAGGTAGACAGTTTCTATGGGGCATAGGCCTCCCAAAAAGTAATGGAGGC 25908718 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||||| | || | ||||||| | || | | |||||||||||| ||||| Sbjct 25908719 GTGCAAAGATTTCTTCGAGTCGGATGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 25908777 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | ||| | ||| ||||| |||||||||| | |||| ||||||| ||| Sbjct 25908778 GCTTGACTGCAAGACCTACCCGTCGAGCAGAGACGAAAGTCAGCCTTAGTGATCCGACGG 25908837 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || || ||||| ||||||||| | ||||||||| ||| || | |||| Sbjct 25908838 TGTCGAGTGGAAGAACCGTCGCTCAATGGATAAAAGTTACTCTAGAGATA 25908887 >seq6 Length=44357769 Score = 107 bits (118), Expect = 4e-21 Identities = 129/169 (76%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 174 CAAAGATACCCTCAGCTTGGATGGAAACCATG-CGCAC-AGTGCAAAGGCAAAAGGGTGT 231 ||||||| | || | | ||||||||| || | | | |||||||||| | ||||| | Sbjct 21369228 CAAAGATTTCTTCGGATCGGATGGAAAT--TGACTCTCGAGTGCAAAGGTAGAAGGGAGC 21369285 Query 232 TTGACTGCGACACCC-TCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 ||||||| | |||| || | || ||||||||||||||| | |||| ||||||| |||| Sbjct 21369286 TTGACTGTAAGACCCATCCA-TCGAGCAGGGACGAAAGTTAGTCTTAGTGATCCGACGGT 21369344 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || || || || | ||||||||| | ||||||||| || || |||||| Sbjct 21369345 GCCGAGTGAAAGGACCGTCGCTCAATGGATAAAAGTGACTCTAGGGATA 21369393 >seq50 Length=1501344 Score = 98.7 bits (108), Expect = 2e-18 Identities = 162/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||| | || | |||||| | || || |||||||||| | ||||| |||| Sbjct 168115 GGACAGTCTTAGGTAGACAGTTTTTATTGGACGTAGGCCTCCCAAAAACTAACGAAGGCA 168174 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAA-GGCAAAAGGGT 229 |||| | | || | | ||| || | | || | | |||||||| |||| || | Sbjct 168175 TACAAAAGTTTCTTCGGGTCGGACAGAGATTA-GCCCTCGAGTGCAAAAGGCAGGAGAGA 168233 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 || |||||| | |||| | || || ||||| ||||||||| |||| |||||| || Sbjct 168234 GTCTGACTGTAAGACCCACCCATCAAGTAGGGATGAAAGTCGGCCTTAGTGATCCCATGG 168293 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| |||||||||| ||||||||||| | | | |||||| Sbjct 168294 TGCCGAGTGGAAGGGCCGTCGCTTAACGGATAAAAGTTCCTTTAGGGATA 168343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982006440736