Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq40061 107 2e-21 seq369 96.9 4e-18 seq30752 84.2 2e-14 seq190 84.2 2e-14 seq16 77.0 4e-12 >seq40061 Length=156973 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 108346 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 108287 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 108286 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 108228 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 108227 ACAAGGAATTTCGCTACCTTAGGACCGTTA 108198 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 133820 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 133879 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 133880 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 133938 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 133939 ACAAGGAATTTCGCTACCTTAGGACCGTTA 133968 >seq369 Length=445541 Score = 96.9 bits (106), Expect = 4e-18 Identities = 109/149 (73%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| ||| || |||| | |||||||||| || | | ||||||||||| Sbjct 264056 GGGTCTTTCTATCCAGATGCAGGTAGTTTGCATCTTCACAGACATGTCTATTTCACTGAG 263997 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 || ||||||||| ||| || ||||||| ||||||| ||||| ||| Sbjct 263996 CTTCTCTTTGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGA-CTTACTCGA 263938 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||| ||||||||||||||||| Sbjct 263937 CAAGGAATTTCACTACCTTAGGACCGTTA 263909 >seq30752 Length=2258 Score = 84.2 bits (92), Expect = 2e-14 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 128 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 786 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 741 >seq190 Length=710995 Score = 84.2 bits (92), Expect = 2e-14 Identities = 54/58 (93%), Gaps = 1/58 (2%) Strand=Plus/Plus Query 116 ACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 326094 ACCTTTCGTGC-GGTCGGAACTTACCCAACAAGGAATTTCGCTACATTAGGACCGTTA 326150 >seq16 Length=21371083 Score = 77.0 bits (84), Expect = 4e-12 Identities = 104/149 (70%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 || ||||| |||| || |||| || |||||||||| || | | |||||| ||| Sbjct 1621327 GGATCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATATCTATTTCATCGAG 1621386 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 || | ||||||| || || ||||||| ||||| |||||| |||| Sbjct 1621387 CTTCTCTTCGAGACAGTGCCCAGATCGTTATGCCTTTCGTGCGGGTCGAAACTTATCCGA 1621446 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 || |||||||||||||||||||||||| Sbjct 1621447 TAAAAAATTTCGCTACCTTAGGACCGTTA 1621475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546987636639