Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq40061 226 6e-57 seq1093 185 2e-44 seq98 152 1e-34 seq46 152 1e-34 seq541 141 2e-31 seq9 141 2e-31 seq4 118 2e-24 seq52 111 3e-22 seq5 102 2e-19 >seq40061 Length=156973 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 102739 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 102681 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 102680 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 102621 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 102620 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 102561 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 102560 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 102515 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 102514 CAACCGTTTCCAGTTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 102457 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 102456 GTCCGCCACT 102447 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 139427 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 139485 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 139486 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 139545 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 139546 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 139605 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 139606 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 139651 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 139652 CAACCGTTTCCAGTTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 139709 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 139710 GTCCGCCACT 139719 >seq1093 Length=159761 Score = 185 bits (204), Expect = 2e-44 Identities = 143/169 (85%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||| || |||| | | ||| |||||||||||||| || | || ||||| ||||||| Sbjct 20562 CACGTGGTATTGCTTCG-TCAAGCTTTCGCCCATTGCAAAAAACTCTCCACTACTGCCTC 20620 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 20621 TTGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGTT 20680 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 || |||| || ||||||| ||| ||| ||||||||||||||||||| || Sbjct 20681 ACTGATCATCACCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGA 20729 >seq98 Length=870214 Score = 152 bits (168), Expect = 1e-34 Identities = 135/166 (81%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 32 GCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCG 91 ||||||||| || ||||||||||| |||||| || |||| |||||||||| || | Sbjct 629865 GCGGCATTG-CTCTGTCAGGCTTTCGTCCATTGCAGAAAATTCTCCACTGCTGCTTCGCA 629923 Query 92 TAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACG 151 || |||||||| |||||||||||| ||||| | |||||||||||||| ||||| ||| Sbjct 629924 TAAGAGTCTGGGCCGTGTCTCAGTCCCAGTATAGCTGATCATCCTCTCGGACCACCTACT 629983 Query 152 GATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 |||| || ||||| ||| ||||||||| ||||||||||||| || Sbjct 629984 GATCATCATTTTGGTAAGCTATTACCTCA-CAACTAGCTAATCAGA 630028 >seq46 Length=1555977 Score = 152 bits (168), Expect = 1e-34 Identities = 154/199 (77%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 20 TCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCAC 79 || ||||| || | | |||| ||||||| ||||||| |||||||||||| ||||||||| Sbjct 381730 TCCTTCACTCATGAGATATTG-CTGGATCGGGCTTTCACCCATTGTCCAAGATTCCCCAC 381672 Query 80 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTC 139 ||||||| ||| | |||||| || |||||||||||| | | |||| ||||||| | Sbjct 381671 TGCTGCCCCCCATGGGAGTCCGGGCCGTGTCTCAGTCCTAATGTGGCTGATCAATCAAAA 381612 Query 140 AGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACC 199 ||| ||| || | ||| | |||||| |||| ||| || |||||||| ||||| | || Sbjct 381611 AGATCAGCTAAGCATCATTTGCTTGGTCAGCCTTTATCTGACCAACTACCTAATACTACG 381552 Query 200 TAGGCTCATCTGATAGCGC 218 ||||||||| | ||||| Sbjct 381551 CAGGCTCATCAAACAGCGC 381533 >seq541 Length=279719 Score = 141 bits (156), Expect = 2e-31 Identities = 134/170 (79%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||| ||||| | |||| ||| |||| ||| |||| |||| Sbjct 238078 CACGCGGCATTG-CTCCGTCAGACTTTCATCTATTGCACAAAATTCTCCATTGCTACCTC 238136 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||| | |||||||||||||||||| |||||||||||||| |||||| | Sbjct 238137 TTGTAGGAGTCTAGGTTATGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 238196 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || || ||| |||| | ||| ||| |||| ||||||| |||||| ||| Sbjct 238197 ACTAATTATCGTCTTGATAAGCTATTGCCTCGCCAACTAACTAATCAGAC 238246 >seq9 Length=38056896 Score = 141 bits (156), Expect = 2e-31 Identities = 96/108 (89%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 83 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| || Sbjct 16670480 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTCTCAGTGTGGCTGATCATCCTCTCGGA 16670421 Query 143 CCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCT 190 |||| || |||| ||| |||||| ||| ||| ||||||||||||||| Sbjct 16670420 CCAGCTATTGATCATCGTCTTGGTAAGCTATTGCCTCACCAACTAGCT 16670373 Score = 125 bits (138), Expect = 2e-26 Identities = 127/164 (77%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 34 GGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTA 93 ||||||| || |||||||| | |||||| || |||| | ||| |||||||| || Sbjct 17176289 GGCATTG-CTCCGTCAGGCTTCCATCCATTGCAAAAAATTCTCTACTAATGCCTCCCATA 17176347 Query 94 GGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGA 153 ||||||||| | ||||| ||||| | |||| ||||||| |||| |||||| || | Sbjct 17176348 GGAGTCTGGGTCATGTCTTAGTTCTAATGTGTTTGATCATTCTCTTGGACCAGCTATTAA 17176407 Query 154 TCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 || || ||||||| ||| ||| ||||||||||||||||||| || Sbjct 17176408 TCATCACCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGA 17176451 >seq4 Length=57251647 Score = 118 bits (130), Expect = 2e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 82 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAG 141 |||||| |||| ||||| ||| | ||||| |||| |||||||| |||||||||||| | Sbjct 25336358 CTGCCTTCCGTGGGAGTTTGGGCTGTGTCACAGTCCCAGTGTGGTTGATCATCCTCTTGG 25336299 Query 142 ACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 ||||| || |||| ||| |||||| ||| ||| ||||||||||||||||||| Sbjct 25336298 ACCAGCTATTGATCATCGTCTTGGTAAGCTATTGCCTCACCAACTAGCTAATC 25336246 >seq52 Length=1422267 Score = 111 bits (122), Expect = 3e-22 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 108 GTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTG 167 |||||||| |||||||| |||||||||||||| |||||| ||| |||| | |||||||| Sbjct 476828 GTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATTGCCTTGGTA 476887 Query 168 AGCCATTACCTCACCAACTAGCTAATCCGAC 198 ||| ||| ||||| ||||||||||||| ||| Sbjct 476888 AGCTATTGCCTCATCAACTAGCTAATCAGAC 476918 >seq5 Length=51955539 Score = 102 bits (112), Expect = 2e-19 Identities = 131/176 (74%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| ||| || | || | ||| ||||||||||| Sbjct 8460966 CTTTACAAGCAGCACTGCCCTTCTT-CACCCACACGATAGTG-CAGGACCAGGCTTTCGC 8461023 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||| | | || ||| | |||||| | || | ||||| ||| Sbjct 8461024 CCATTGTCCAAGATTCCCCAATACCACC-CCCATGGGAGTCCAGGCCATATCTCAATTCT 8461082 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATT 174 |||||| ||||||||| ||||||| || | || | | |||||| |||| || Sbjct 8461083 AGTGTGGTTGATCATCCAAAGAGACCAGCTAAGCTTCATTGGCTTGGTCAGCCTTT 8461138 Score = 96.9 bits (106), Expect = 7e-18 Identities = 84/103 (82%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 32 GCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCG 91 ||||||||| || ||||| |||||||| |||| || |||| ||||| |||| ||||| Sbjct 47242574 GCGGCATTG-CTCTATCAGACTTTCGCCTATTGCGGAAAATTCTCCACTACTGCTTCCCG 47242632 Query 92 TAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 ||||||| || || | ||||||| |||||||| ||||||||| Sbjct 47242633 TAGGAGTTTGAGCCATATCTCAGTCCCAGTGTGGCTGATCATC 47242675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071570546080