Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13]
40,061 sequences; 1,535,178,229 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq40061 226 6e-57
seq1093 185 2e-44
seq98 152 1e-34
seq46 152 1e-34
seq541 141 2e-31
seq9 141 2e-31
seq4 118 2e-24
seq52 111 3e-22
seq5 102 2e-19
>seq40061
Length=156973
Score = 226 bits (250), Expect = 6e-57
Identities = 240/310 (77%), Gaps = 20/310 (6%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 102739 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 102681
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 102680 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 102621
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207
|| |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | |
Sbjct 102620 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 102561
Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267
|| || ||| || ||| |||| | | | | | || | ||||||||
Sbjct 102560 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 102515
Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325
| |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||
Sbjct 102514 CAACCGTTTCCAGTTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 102457
Query 326 GTCCGCCGCT 335
||||||| ||
Sbjct 102456 GTCCGCCACT 102447
Score = 226 bits (250), Expect = 6e-57
Identities = 240/310 (77%), Gaps = 20/310 (6%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 139427 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 139485
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 139486 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 139545
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207
|| |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | |
Sbjct 139546 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 139605
Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267
|| || ||| || ||| |||| | | | | | || | ||||||||
Sbjct 139606 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 139651
Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325
| |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||
Sbjct 139652 CAACCGTTTCCAGTTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 139709
Query 326 GTCCGCCGCT 335
||||||| ||
Sbjct 139710 GTCCGCCACT 139719
>seq1093
Length=159761
Score = 185 bits (204), Expect = 2e-44
Identities = 143/169 (85%), Gaps = 1/169 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||| || |||| | | ||| |||||||||||||| || | || ||||| |||||||
Sbjct 20562 CACGTGGTATTGCTTCG-TCAAGCTTTCGCCCATTGCAAAAAACTCTCCACTACTGCCTC 20620
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 20621 TTGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGTT 20680
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197
|| |||| || ||||||| ||| ||| ||||||||||||||||||| ||
Sbjct 20681 ACTGATCATCACCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGA 20729
>seq98
Length=870214
Score = 152 bits (168), Expect = 1e-34
Identities = 135/166 (81%), Gaps = 2/166 (1%)
Strand=Plus/Plus
Query 32 GCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCG 91
||||||||| || ||||||||||| |||||| || |||| |||||||||| || |
Sbjct 629865 GCGGCATTG-CTCTGTCAGGCTTTCGTCCATTGCAGAAAATTCTCCACTGCTGCTTCGCA 629923
Query 92 TAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACG 151
|| |||||||| |||||||||||| ||||| | |||||||||||||| ||||| |||
Sbjct 629924 TAAGAGTCTGGGCCGTGTCTCAGTCCCAGTATAGCTGATCATCCTCTCGGACCACCTACT 629983
Query 152 GATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197
|||| || ||||| ||| ||||||||| ||||||||||||| ||
Sbjct 629984 GATCATCATTTTGGTAAGCTATTACCTCA-CAACTAGCTAATCAGA 630028
>seq46
Length=1555977
Score = 152 bits (168), Expect = 1e-34
Identities = 154/199 (77%), Gaps = 1/199 (1%)
Strand=Plus/Minus
Query 20 TCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCAC 79
|| ||||| || | | |||| ||||||| ||||||| |||||||||||| |||||||||
Sbjct 381730 TCCTTCACTCATGAGATATTG-CTGGATCGGGCTTTCACCCATTGTCCAAGATTCCCCAC 381672
Query 80 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTC 139
||||||| ||| | |||||| || |||||||||||| | | |||| ||||||| |
Sbjct 381671 TGCTGCCCCCCATGGGAGTCCGGGCCGTGTCTCAGTCCTAATGTGGCTGATCAATCAAAA 381612
Query 140 AGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACC 199
||| ||| || | ||| | |||||| |||| ||| || |||||||| ||||| | ||
Sbjct 381611 AGATCAGCTAAGCATCATTTGCTTGGTCAGCCTTTATCTGACCAACTACCTAATACTACG 381552
Query 200 TAGGCTCATCTGATAGCGC 218
||||||||| | |||||
Sbjct 381551 CAGGCTCATCAAACAGCGC 381533
>seq541
Length=279719
Score = 141 bits (156), Expect = 2e-31
Identities = 134/170 (79%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||| ||||| | |||| ||| |||| ||| |||| ||||
Sbjct 238078 CACGCGGCATTG-CTCCGTCAGACTTTCATCTATTGCACAAAATTCTCCATTGCTACCTC 238136
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||| | |||||||||||||||||| |||||||||||||| |||||| |
Sbjct 238137 TTGTAGGAGTCTAGGTTATGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 238196
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198
|| || ||| |||| | ||| ||| |||| ||||||| |||||| |||
Sbjct 238197 ACTAATTATCGTCTTGATAAGCTATTGCCTCGCCAACTAACTAATCAGAC 238246
>seq9
Length=38056896
Score = 141 bits (156), Expect = 2e-31
Identities = 96/108 (89%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 83 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||
Sbjct 16670480 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTCTCAGTGTGGCTGATCATCCTCTCGGA 16670421
Query 143 CCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCT 190
|||| || |||| ||| |||||| ||| ||| |||||||||||||||
Sbjct 16670420 CCAGCTATTGATCATCGTCTTGGTAAGCTATTGCCTCACCAACTAGCT 16670373
Score = 125 bits (138), Expect = 2e-26
Identities = 127/164 (77%), Gaps = 1/164 (1%)
Strand=Plus/Plus
Query 34 GGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTA 93
||||||| || |||||||| | |||||| || |||| | ||| |||||||| ||
Sbjct 17176289 GGCATTG-CTCCGTCAGGCTTCCATCCATTGCAAAAAATTCTCTACTAATGCCTCCCATA 17176347
Query 94 GGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGA 153
||||||||| | ||||| ||||| | |||| ||||||| |||| |||||| || |
Sbjct 17176348 GGAGTCTGGGTCATGTCTTAGTTCTAATGTGTTTGATCATTCTCTTGGACCAGCTATTAA 17176407
Query 154 TCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197
|| || ||||||| ||| ||| ||||||||||||||||||| ||
Sbjct 17176408 TCATCACCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGA 17176451
>seq4
Length=57251647
Score = 118 bits (130), Expect = 2e-24
Identities = 94/113 (83%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 82 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAG 141
|||||| |||| ||||| ||| | ||||| |||| |||||||| |||||||||||| |
Sbjct 25336358 CTGCCTTCCGTGGGAGTTTGGGCTGTGTCACAGTCCCAGTGTGGTTGATCATCCTCTTGG 25336299
Query 142 ACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194
||||| || |||| ||| |||||| ||| ||| |||||||||||||||||||
Sbjct 25336298 ACCAGCTATTGATCATCGTCTTGGTAAGCTATTGCCTCACCAACTAGCTAATC 25336246
>seq52
Length=1422267
Score = 111 bits (122), Expect = 3e-22
Identities = 79/91 (87%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 108 GTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTG 167
|||||||| |||||||| |||||||||||||| |||||| ||| |||| | ||||||||
Sbjct 476828 GTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATTGCCTTGGTA 476887
Query 168 AGCCATTACCTCACCAACTAGCTAATCCGAC 198
||| ||| ||||| ||||||||||||| |||
Sbjct 476888 AGCTATTGCCTCATCAACTAGCTAATCAGAC 476918
>seq5
Length=51955539
Score = 102 bits (112), Expect = 2e-19
Identities = 131/176 (74%), Gaps = 5/176 (3%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||||| | | | | ||||||| ||| ||| || | || | ||| |||||||||||
Sbjct 8460966 CTTTACAAGCAGCACTGCCCTTCTT-CACCCACACGATAGTG-CAGGACCAGGCTTTCGC 8461023
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
||||||||||| |||||||| | | || ||| | |||||| | || | ||||| |||
Sbjct 8461024 CCATTGTCCAAGATTCCCCAATACCACC-CCCATGGGAGTCCAGGCCATATCTCAATTCT 8461082
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATT 174
|||||| ||||||||| ||||||| || | || | | |||||| |||| ||
Sbjct 8461083 AGTGTGGTTGATCATCCAAAGAGACCAGCTAAGCTTCATTGGCTTGGTCAGCCTTT 8461138
Score = 96.9 bits (106), Expect = 7e-18
Identities = 84/103 (82%), Gaps = 1/103 (1%)
Strand=Plus/Plus
Query 32 GCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCG 91
||||||||| || ||||| |||||||| |||| || |||| ||||| |||| |||||
Sbjct 47242574 GCGGCATTG-CTCTATCAGACTTTCGCCTATTGCGGAAAATTCTCCACTACTGCTTCCCG 47242632
Query 92 TAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134
||||||| || || | ||||||| |||||||| |||||||||
Sbjct 47242633 TAGGAGTTTGAGCCATATCTCAGTCCCAGTGTGGCTGATCATC 47242675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071570546080
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