Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq40061 271 3e-70 seq5 165 3e-38 seq8 125 3e-26 seq2 116 1e-23 seq10 111 6e-22 seq492 107 7e-21 seq15 107 7e-21 seq6 98.7 4e-18 >seq40061 Length=156973 Score = 271 bits (300), Expect = 3e-70 Identities = 346/470 (74%), Gaps = 26/470 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 107114 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 107055 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 107054 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 106995 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 106994 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 106935 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | |||||||| |||||||||||||| ||||| || || |||| Sbjct 106934 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTGCGGCT---CCGGTGGGTTCCCTTAA 106882 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 106881 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 106827 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 | | | ||| |||| || | ||| || || ||||||| || ||||||||| Sbjct 106826 ATCACA-------TTCTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCAC 106774 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||||||||||||||||||| | |||||||||||||| | Sbjct 106773 TCCCCGATGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 106714 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 106713 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 106664 Score = 271 bits (300), Expect = 3e-70 Identities = 346/470 (74%), Gaps = 26/470 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 135052 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 135111 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 135112 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 135171 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 135172 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 135231 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | |||||||| |||||||||||||| ||||| || || |||| Sbjct 135232 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTGCGGCT---CCGGTGGGTTCCCTTAA 135284 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 135285 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 135339 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 | | | ||| |||| || | ||| || || ||||||| || ||||||||| Sbjct 135340 ATCACA-------TTCTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCAC 135392 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||||||||||||||||||| | |||||||||||||| | Sbjct 135393 TCCCCGATGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 135452 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 135453 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 135502 >seq5 Length=51955539 Score = 165 bits (182), Expect = 3e-38 Identities = 323/469 (69%), Gaps = 30/469 (6%) Strand=Plus/Minus Query 138 CTGCACCTAAATGCATTTCGGGGAGAACCAGCTA--TCACGAAGTTTGATTGGCCTTTCA 195 |||| ||| ||||||||||| ||| ||| ||||| || || || || |||| ||||| Sbjct 10406435 CTGCGCCTCAATGCATTTCGAGGAAAACTAGCTAGTTCTGGA--TTCGAGTGGCATTTCA 10406378 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 || ||| || || ||||| || | |||||| | ||| | ||||| ||||||| | Sbjct 10406377 CCTCTAACCTCAACTCATCTGCTGATCCTTCAACATCAGTCGATTCGGACCTCCACTTAG 10406318 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GT 313 | | |||| |||||| | || ||| |||||||||| | |||| || | | | | || Sbjct 10406317 TTTCACCCAAGCTTCATCTTGATCATAGATAGATCACCCAGATTCGAGTCCATAAGCAGT 10406258 Query 314 GCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACG----GGTTA 369 | || ||| ||||| ||||| |||||||||||||| ||| | |||| Sbjct 10406257 GACAATCA----CCCTACGAAGACTCACTTTCGCTACGGCT---CCAGTGGATTCTGTTA 10406205 Query 370 ACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGG 428 ||| || || || | | ||| | |||||||||||| |||||||| |||| Sbjct 10406204 ACCAAGC--CATTACCTATGAGTCGATGACTCATTCTTCAACAGGCACGCGGTCA----- 10406152 Query 429 TACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCA 488 ||| || ||| |||| || ||| || |||| ||| | || |||||||| Sbjct 10406151 ----GAAATCACA-TTCTCCTCCCACTACTTGGGAGCTCATGATTTTATGTTCTATTTCA 10406097 Query 489 CTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCA 548 |||||| ||||| ||||||| ||||||||||| ||||| | |||||| |||| | Sbjct 10406096 CTCCCCAATGGGGGTTCTTTTCATCTTTCCCTCACAGTACTATTTTGCTATCAGTCATCT 10406037 Query 549 AGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTT 597 |||||||||||| ||| || |||| | |||| ||| || |||| Sbjct 10406036 AGGAGTATTTAGCCTTGCAAGGCGGTCTTTGCTGATTTACATGAGATTT 10405988 Score = 80.6 bits (88), Expect = 1e-12 Identities = 74/93 (80%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | | |||||| || ||| |||||||| ||||| | Sbjct 180813 CTTCGACTGATTGTTCGCATCAGATCTCAGGTTCTCTATTGCACTCCCCAATTGGGGTTC 180754 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTA 538 ||||||||||||||||||||||||||| ||||| Sbjct 180753 TTTTCACCTTTCCCTCACGGTACTTGTACGCTA 180721 >seq8 Length=40195399 Score = 125 bits (138), Expect = 3e-26 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || ||||||||||||||| |||||| | | |||| | |||| ||| || Sbjct 29095273 GCTGCGCCTCAACGCATTTCGGGGAGAATCAGCTAGCTCTGGGTTTTAGTGGCATTTTAC 29095214 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| |||| || ||||||| || Sbjct 29095213 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTTGGACCTCCACTTAGT 29095154 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 | |||| |||||| |||| |||||||||||||| |||||||| Sbjct 29095153 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAAGTTCGGGTC 29095105 >seq2 Length=65558141 Score = 116 bits (128), Expect = 1e-23 Identities = 313/472 (66%), Gaps = 29/472 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||||||| || ||||| | |||||||||||| | | || || |||| |||||| Sbjct 6512990 GCTGCACCTCAACATATTTCAGAGAGAACCAGCTAGCTCTGGTTTCGAGTGGCATTTCAC 6513049 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||| || | |||||||| | ||| | ||| | ||||||| || Sbjct 6513050 CCCTAACCACAACGTATCCACTGATTTTTCAACATCAGTCGATTCAGACCTCCACTTAGT 6513109 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCC 316 | |||| |||||| |||| | |||||||||||| | | || ||||| | || Sbjct 6513110 TTCACCCAAGCTTCATCCTGATCTTGGATAGATCACCTAGGTTTGGGTC-CGTAAGTAAT 6513168 Query 317 ACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGG-----TTAAC 371 | || |||||||| ||||| ||||| || ||||| | | ||| |||| Sbjct 6513169 A-ACAATCGCCCTATGAAGACTCACTTTCACTGCGGCT----CTGATGGGTTCCCTTAAT 6513223 Query 372 CTCGCGAC--ACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 | || || | | | | |||| |||||||| || | | ||| |||| | Sbjct 6513224 CAAGCCACTGTCTATG---AGTCGCCGGCTCATTTTTTCACAAACACATAGTCAGAGATT 6513280 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGG-TTTCAGGTACTATTTCA 488 || ||| |||| || | ||| || | || ||||| | |||||| | Sbjct 6513281 AC----------ATTCTCCTCCCACTGCTTGGGAGCTTACGGTTTTCATATTCTATTTTA 6513330 Query 489 CTCCCCG-CCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACC 547 ||| | | |||||| |||| | |||| |||||| ||||| | | ||||||||||| Sbjct 6513331 CTCTCTGATGAGGGGT-TTTTTTATCTTTTCCTCACAGTACTACTTCATTATCGGTCACC 6513389 Query 548 AAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||||||| ||| ||||||| ||||||||| ||||||| Sbjct 6513390 CAGGAGTATTTAGCCTTGCAAAGTGGTCCTTGTTGATTCACACAGAATTTCA 6513441 >seq10 Length=31890735 Score = 111 bits (122), Expect = 6e-22 Identities = 281/423 (66%), Gaps = 26/423 (6%) Strand=Plus/Plus Query 143 CCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTAT 202 ||| | ||||||| ||||||||||| ||| | | ||| | |||| ||||||||||| Sbjct 1667648 CCTCATTGCATTTTGGGGAGAACCATCTAGCTCTGGGTTCAAGTGGCATTTCACCCCTAA 1667707 Query 203 CCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC 262 ||||| |||||| || | ||||||| | | ||||| || ||| || | | | Sbjct 1667708 CCACAACTCATCCGCTGACTTTTCAATACCAATTGGTTCATATCTTCACTTAGTTTCATC 1667767 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGA--TCGTGCCACTC 320 | |||| | ||| ||||||||||||| | ||||| || | | ||| || || Sbjct 1667768 CAAGCTTTATCCTAGTCATGGATAGATCATCCAGGTTCGGATCCATAAGTAGTGACAATC 1667827 Query 321 ATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTT-----AACCTCG 375 | || || |||||||||||||| |||| ||| | ||||| |||| | Sbjct 1667828 GT----CCAATGAAGACTCGCTTTCGCTGTGGCT---CCA-ATGGGTTCCCTTAACCAAG 1667879 Query 376 CGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAA 435 | || | | | || ||||||||||| || ||| || |||| | | || Sbjct 1667880 CCACT-ATCTATGAGTCATTGGCTCATTCTTTAATAGGAACATGGTCAAA--GATCATA- 1667935 Query 436 AAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCG 495 ||| |||| || | ||| || ||| |||||| || |||||||||| ||| Sbjct 1667936 -------TTCTCCTCCCACTGCTTGGGAGCTCATAGTTTCATGTTCTATTTCACTATCCG 1667988 Query 496 CCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTA 555 | ||| |||||||||||| ||||| |||||| | | ||||| | |||||| |||| Sbjct 1667989 ATGGAGGTTCTTTTCACCTTTTCCTCATGGTACTACTTCACTATCAGACACCAAAAAGTA 1668048 Query 556 TTT 558 ||| Sbjct 1668049 TTT 1668051 >seq492 Length=330899 Score = 107 bits (118), Expect = 7e-21 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 |||||| || ||||||||||||||| ||| ||||| | | | || || |||| |||||| Sbjct 326536 GCTGCATCTCAATGCATTTCGGGGACAACTAGCTAGCTCTAGATTCGAGTGGCATTTCAC 326595 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 | ||| ||||| |||| | | | | ||||| | ||| |||| || ||||||| || Sbjct 326596 CTCTAACCACAATTCATTCGTTGATTCTTCAATATCAGTCGGTTTGGACCTCCACTTAGT 326655 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTC 300 | ||| ||||| ||||| |||||||||||||| ||||| Sbjct 326656 TTCACCTAAACTTCATCCTGCTCATGGATAGATCACCCAGCTTC 326699 >seq15 Length=24314465 Score = 107 bits (118), Expect = 7e-21 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||||||| || | ||||||| |||||||||||| | | | ||| || |||| ||||| Sbjct 21947086 GCTGCACCTTAACGTATTTCGGAGAGAACCAGCTAGCTCTAGGTTCGAATGGCATTTCAT 21947145 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| |||| |||||| | | | |||||| | ||| ||||||| ||||||| || Sbjct 21947146 CCCTAATCACAACTCATCCGTTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 21947205 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACT 293 | | || ||||| ||| || |||||||||||| Sbjct 21947206 TTCATCCAAACTTCATACTGATCACGGATAGATCACT 21947242 >seq6 Length=44357769 Score = 98.7 bits (108), Expect = 4e-18 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 184 ATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGG 243 |||||| ||||||||||| ||||| |||||| || | | |||||| | ||| ||||||| Sbjct 37292808 ATTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGG 37292749 Query 244 TCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCAC 292 ||||||| || | |||| |||||| |||| |||||||||||||| Sbjct 37292748 ACCTCCACTTAGTTTCACCCAAGCTTCATCCTGATCATGGATAGATCAC 37292700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816871851264