Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13]
40,061 sequences; 1,535,178,229 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq40061 271 3e-70
seq5 165 3e-38
seq8 125 3e-26
seq2 116 1e-23
seq10 111 6e-22
seq492 107 7e-21
seq15 107 7e-21
seq6 98.7 4e-18
>seq40061
Length=156973
Score = 271 bits (300), Expect = 3e-70
Identities = 346/470 (74%), Gaps = 26/470 (6%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 107114 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 107055
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| ||
Sbjct 107054 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 106995
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 106994 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 106935
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | |||||||| |||||||||||||| ||||| || || ||||
Sbjct 106934 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTGCGGCT---CCGGTGGGTTCCCTTAA 106882
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| | | | |||| |||||||||||||| |||||||| |||| |
Sbjct 106881 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 106827
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
| | | ||| |||| || | ||| || || ||||||| || |||||||||
Sbjct 106826 ATCACA-------TTCTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCAC 106774
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||||| ||||| ||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 106773 TCCCCGATGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 106714
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 106713 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 106664
Score = 271 bits (300), Expect = 3e-70
Identities = 346/470 (74%), Gaps = 26/470 (6%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 135052 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 135111
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| ||
Sbjct 135112 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 135171
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 135172 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 135231
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | |||||||| |||||||||||||| ||||| || || ||||
Sbjct 135232 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTGCGGCT---CCGGTGGGTTCCCTTAA 135284
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| | | | |||| |||||||||||||| |||||||| |||| |
Sbjct 135285 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 135339
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
| | | ||| |||| || | ||| || || ||||||| || |||||||||
Sbjct 135340 ATCACA-------TTCTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCAC 135392
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||||| ||||| ||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 135393 TCCCCGATGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 135452
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 135453 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 135502
>seq5
Length=51955539
Score = 165 bits (182), Expect = 3e-38
Identities = 323/469 (69%), Gaps = 30/469 (6%)
Strand=Plus/Minus
Query 138 CTGCACCTAAATGCATTTCGGGGAGAACCAGCTA--TCACGAAGTTTGATTGGCCTTTCA 195
|||| ||| ||||||||||| ||| ||| ||||| || || || || |||| |||||
Sbjct 10406435 CTGCGCCTCAATGCATTTCGAGGAAAACTAGCTAGTTCTGGA--TTCGAGTGGCATTTCA 10406378
Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255
|| ||| || || ||||| || | |||||| | ||| | ||||| ||||||| |
Sbjct 10406377 CCTCTAACCTCAACTCATCTGCTGATCCTTCAACATCAGTCGATTCGGACCTCCACTTAG 10406318
Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GT 313
| | |||| |||||| | || ||| |||||||||| | |||| || | | | | ||
Sbjct 10406317 TTTCACCCAAGCTTCATCTTGATCATAGATAGATCACCCAGATTCGAGTCCATAAGCAGT 10406258
Query 314 GCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACG----GGTTA 369
| || ||| ||||| ||||| |||||||||||||| ||| | ||||
Sbjct 10406257 GACAATCA----CCCTACGAAGACTCACTTTCGCTACGGCT---CCAGTGGATTCTGTTA 10406205
Query 370 ACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGG 428
||| || || || | | ||| | |||||||||||| |||||||| ||||
Sbjct 10406204 ACCAAGC--CATTACCTATGAGTCGATGACTCATTCTTCAACAGGCACGCGGTCA----- 10406152
Query 429 TACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCA 488
||| || ||| |||| || ||| || |||| ||| | || ||||||||
Sbjct 10406151 ----GAAATCACA-TTCTCCTCCCACTACTTGGGAGCTCATGATTTTATGTTCTATTTCA 10406097
Query 489 CTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCA 548
|||||| ||||| ||||||| ||||||||||| ||||| | |||||| |||| |
Sbjct 10406096 CTCCCCAATGGGGGTTCTTTTCATCTTTCCCTCACAGTACTATTTTGCTATCAGTCATCT 10406037
Query 549 AGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTT 597
|||||||||||| ||| || |||| | |||| ||| || ||||
Sbjct 10406036 AGGAGTATTTAGCCTTGCAAGGCGGTCTTTGCTGATTTACATGAGATTT 10405988
Score = 80.6 bits (88), Expect = 1e-12
Identities = 74/93 (80%), Gaps = 2/93 (2%)
Strand=Plus/Minus
Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505
|| |||| |||||| ||| | | |||||| || ||| |||||||| ||||| |
Sbjct 180813 CTTCGACTGATTGTTCGCATCAGATCTCAGGTTCTCTATTGCACTCCCCAATTGGGGTTC 180754
Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTA 538
||||||||||||||||||||||||||| |||||
Sbjct 180753 TTTTCACCTTTCCCTCACGGTACTTGTACGCTA 180721
>seq8
Length=40195399
Score = 125 bits (138), Expect = 3e-26
Identities = 129/169 (76%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || ||||||||||||||| |||||| | | |||| | |||| ||| ||
Sbjct 29095273 GCTGCGCCTCAACGCATTTCGGGGAGAATCAGCTAGCTCTGGGTTTTAGTGGCATTTTAC 29095214
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | | |||||| | ||| |||| || ||||||| ||
Sbjct 29095213 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTTGGACCTCCACTTAGT 29095154
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305
| |||| |||||| |||| |||||||||||||| ||||||||
Sbjct 29095153 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAAGTTCGGGTC 29095105
>seq2
Length=65558141
Score = 116 bits (128), Expect = 1e-23
Identities = 313/472 (66%), Gaps = 29/472 (6%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||||||| || ||||| | |||||||||||| | | || || |||| ||||||
Sbjct 6512990 GCTGCACCTCAACATATTTCAGAGAGAACCAGCTAGCTCTGGTTTCGAGTGGCATTTCAC 6513049
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||| || | |||||||| | ||| | ||| | ||||||| ||
Sbjct 6513050 CCCTAACCACAACGTATCCACTGATTTTTCAACATCAGTCGATTCAGACCTCCACTTAGT 6513109
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCC 316
| |||| |||||| |||| | |||||||||||| | | || ||||| | ||
Sbjct 6513110 TTCACCCAAGCTTCATCCTGATCTTGGATAGATCACCTAGGTTTGGGTC-CGTAAGTAAT 6513168
Query 317 ACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGG-----TTAAC 371
| || |||||||| ||||| ||||| || ||||| | | ||| ||||
Sbjct 6513169 A-ACAATCGCCCTATGAAGACTCACTTTCACTGCGGCT----CTGATGGGTTCCCTTAAT 6513223
Query 372 CTCGCGAC--ACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
| || || | | | | |||| |||||||| || | | ||| |||| |
Sbjct 6513224 CAAGCCACTGTCTATG---AGTCGCCGGCTCATTTTTTCACAAACACATAGTCAGAGATT 6513280
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGG-TTTCAGGTACTATTTCA 488
|| ||| |||| || | ||| || | || ||||| | |||||| |
Sbjct 6513281 AC----------ATTCTCCTCCCACTGCTTGGGAGCTTACGGTTTTCATATTCTATTTTA 6513330
Query 489 CTCCCCG-CCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACC 547
||| | | |||||| |||| | |||| |||||| ||||| | | |||||||||||
Sbjct 6513331 CTCTCTGATGAGGGGT-TTTTTTATCTTTTCCTCACAGTACTACTTCATTATCGGTCACC 6513389
Query 548 AAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
|||||||||||| ||| ||||||| ||||||||| |||||||
Sbjct 6513390 CAGGAGTATTTAGCCTTGCAAAGTGGTCCTTGTTGATTCACACAGAATTTCA 6513441
>seq10
Length=31890735
Score = 111 bits (122), Expect = 6e-22
Identities = 281/423 (66%), Gaps = 26/423 (6%)
Strand=Plus/Plus
Query 143 CCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTAT 202
||| | ||||||| ||||||||||| ||| | | ||| | |||| |||||||||||
Sbjct 1667648 CCTCATTGCATTTTGGGGAGAACCATCTAGCTCTGGGTTCAAGTGGCATTTCACCCCTAA 1667707
Query 203 CCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC 262
||||| |||||| || | ||||||| | | ||||| || ||| || | | |
Sbjct 1667708 CCACAACTCATCCGCTGACTTTTCAATACCAATTGGTTCATATCTTCACTTAGTTTCATC 1667767
Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGA--TCGTGCCACTC 320
| |||| | ||| ||||||||||||| | ||||| || | | ||| || ||
Sbjct 1667768 CAAGCTTTATCCTAGTCATGGATAGATCATCCAGGTTCGGATCCATAAGTAGTGACAATC 1667827
Query 321 ATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTT-----AACCTCG 375
| || || |||||||||||||| |||| ||| | ||||| |||| |
Sbjct 1667828 GT----CCAATGAAGACTCGCTTTCGCTGTGGCT---CCA-ATGGGTTCCCTTAACCAAG 1667879
Query 376 CGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAA 435
| || | | | || ||||||||||| || ||| || |||| | | ||
Sbjct 1667880 CCACT-ATCTATGAGTCATTGGCTCATTCTTTAATAGGAACATGGTCAAA--GATCATA- 1667935
Query 436 AAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCG 495
||| |||| || | ||| || ||| |||||| || |||||||||| |||
Sbjct 1667936 -------TTCTCCTCCCACTGCTTGGGAGCTCATAGTTTCATGTTCTATTTCACTATCCG 1667988
Query 496 CCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTA 555
| ||| |||||||||||| ||||| |||||| | | ||||| | |||||| ||||
Sbjct 1667989 ATGGAGGTTCTTTTCACCTTTTCCTCATGGTACTACTTCACTATCAGACACCAAAAAGTA 1668048
Query 556 TTT 558
|||
Sbjct 1668049 TTT 1668051
>seq492
Length=330899
Score = 107 bits (118), Expect = 7e-21
Identities = 122/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
|||||| || ||||||||||||||| ||| ||||| | | | || || |||| ||||||
Sbjct 326536 GCTGCATCTCAATGCATTTCGGGGACAACTAGCTAGCTCTAGATTCGAGTGGCATTTCAC 326595
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
| ||| ||||| |||| | | | | ||||| | ||| |||| || ||||||| ||
Sbjct 326596 CTCTAACCACAATTCATTCGTTGATTCTTCAATATCAGTCGGTTTGGACCTCCACTTAGT 326655
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTC 300
| ||| ||||| ||||| |||||||||||||| |||||
Sbjct 326656 TTCACCTAAACTTCATCCTGCTCATGGATAGATCACCCAGCTTC 326699
>seq15
Length=24314465
Score = 107 bits (118), Expect = 7e-21
Identities = 118/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||||||| || | ||||||| |||||||||||| | | | ||| || |||| |||||
Sbjct 21947086 GCTGCACCTTAACGTATTTCGGAGAGAACCAGCTAGCTCTAGGTTCGAATGGCATTTCAT 21947145
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| |||| |||||| | | | |||||| | ||| ||||||| ||||||| ||
Sbjct 21947146 CCCTAATCACAACTCATCCGTTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 21947205
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACT 293
| | || ||||| ||| || ||||||||||||
Sbjct 21947206 TTCATCCAAACTTCATACTGATCACGGATAGATCACT 21947242
>seq6
Length=44357769
Score = 98.7 bits (108), Expect = 4e-18
Identities = 87/109 (80%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 184 ATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGG 243
|||||| ||||||||||| ||||| |||||| || | | |||||| | ||| |||||||
Sbjct 37292808 ATTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGG 37292749
Query 244 TCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCAC 292
||||||| || | |||| |||||| |||| ||||||||||||||
Sbjct 37292748 ACCTCCACTTAGTTTCACCCAAGCTTCATCCTGATCATGGATAGATCAC 37292700
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1816871851264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |