Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq40061 232 2e-58 seq5 158 3e-36 seq2 104 6e-20 seq10 77.0 8e-12 seq25041 75.2 3e-11 seq13536 75.2 3e-11 seq2879 75.2 3e-11 seq2260 75.2 3e-11 >seq40061 Length=156973 Score = 232 bits (256), Expect = 2e-58 Identities = 309/414 (75%), Gaps = 13/414 (3%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 107048 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 106992 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 106991 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 106936 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | ||||||| |||||||||||| |||| || |||| | ||| |||| | Sbjct 106935 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTGCGGCTCCGGTGGGTTCCCTTAACCAA 106878 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || | | Sbjct 106877 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCACATT 106819 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| || ||||||||| | ||||||||||||||| | ||||| Sbjct 106818 CTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGT 106760 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| ||||||||||||||||||| ||| |||||||||| ||| |||||||||||| Sbjct 106759 TCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCT 106700 Query 367 TGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 106699 TGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 106646 Score = 232 bits (256), Expect = 2e-58 Identities = 309/414 (75%), Gaps = 13/414 (3%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 135118 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 135174 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 135175 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 135230 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | ||||||| |||||||||||| |||| || |||| | ||| |||| | Sbjct 135231 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTGCGGCTCCGGTGGGTTCCCTTAACCAA 135288 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || | | Sbjct 135289 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCACATT 135347 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| || ||||||||| | ||||||||||||||| | ||||| Sbjct 135348 CTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGT 135406 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| ||||||||||||||||||| ||| |||||||||| ||| |||||||||||| Sbjct 135407 TCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCT 135466 Query 367 TGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 135467 TGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 135520 >seq5 Length=51955539 Score = 158 bits (174), Expect = 3e-36 Identities = 246/339 (73%), Gaps = 11/339 (3%) Strand=Plus/Minus Query 32 TTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCAT 91 |||||| ||||| ||||| |||||| ||||| | |||||| ||| || | || ||| Sbjct 10406349 TTCAACATCAGTCGATTCGGACCTCCACTTAGTT-TCACCCAAGCTT-CATCTTGATCAT 10406292 Query 92 AGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTC 151 || ||||||| ||| | || || ||| || | || ||| | | ||||| ||||||| Sbjct 10406291 AG-ATAGATCACCCAGATT-CGAGTCCATAAGC-AGTGACAAT-CACCCTACGAAGACTC 10406236 Query 152 GCTTTTCGCTACGCCTCCCCT--ATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGA 209 |||| ||||||| |||| | |||| ||||| | |||| | || ||||| ||| Sbjct 10406235 ACTTT-CGCTACGGCTCCAGTGGATTCTGTTAACCAA-GCCATTACCTATGAGTCGATGA 10406178 Query 210 CCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCAT 269 | |||| | ||| ||| |||| |||| | || | | |||||||| |||| || Sbjct 10406177 CTCATTCTTCAACAGGCACGCGGTCAGAAATCACATTCTCCTCCCACTACTTGGGAGCTC 10406118 Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 | | ||| | | ||||||||||||||| | |||||||||||| ||||||||||| || Sbjct 10406117 ATGATTTTATGTTCTATTTCACTCCCCAATG-GGGGTTCTTTTCATCTTTCCCTCACAGT 10406059 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 |||| || ||||| |||| || |||||||||||||| Sbjct 10406058 ACTATTTTGCTATCAGTCATCTAGGAGTATTTAGCCTTG 10406020 Score = 73.4 bits (80), Expect = 1e-10 Identities = 71/89 (80%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| |||||||| | ||||||||||| Sbjct 180808 ACTGATTGTTCGCATCAGATCTCAGGTTCTCTATTGCACTCCCCAATT-GGGGTTCTTTT 180750 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTA 341 | |||||||||||||||||| || | ||| Sbjct 180749 CACCTTTCCCTCACGGTACTTGTACGCTA 180721 >seq2 Length=65558141 Score = 104 bits (114), Expect = 6e-20 Identities = 247/359 (69%), Gaps = 22/359 (6%) Strand=Plus/Plus Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88 ||||||||| ||||| ||| | |||||| ||||| | |||||| ||| || |||| Sbjct 6513074 TTTTTCAACATCAGTCGATTCAGACCTCCACTTAGTT-TCACCCAAGCTT-CATCCTGAT 6513131 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGA--CGCCCTAGTAA 146 | | ||||||||| || | ||| ||||| | || | | | ||||||| || Sbjct 6513132 CTT-GGATAGATCACCTAGGTTT-GGGTCCGTA----AGTAATAACAATCGCCCTATGAA 6513185 Query 147 GACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAGTC 204 ||||| |||| | || || ||| | ||| |||| | ||||||| || |||| Sbjct 6513186 GACTCACTTT-CACTGCGGCTCTGATGGGTTCCCTTAATCAA-GCCACTGTCTATGAGTC 6513243 Query 205 GCTGACCCATTAT---ACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTT 261 || | | |||| | ||||| || ||||| | | | | |||||||||||| Sbjct 6513244 GCCGGCTCATTTTTTCACAAAC---ACATAGTCAGAGATTACATTCTCCTCCCACTGCTT 6513300 Query 262 GTACGCATACGGTTT-CAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTC 320 | || |||||||| || ||||||| |||| | | |||||| |||| | |||| Sbjct 6513301 GGGAGCTTACGGTTTTCATATTCTATTTTACTCTCTGATGAGGGGTTTTTTTATCTTTTC 6513360 Query 321 CCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379 | |||| |||||| |||| ||||||||| ||| |||||||||||||| | |||||| Sbjct 6513361 C-TCACAGTACTACTTCATTATCGGTCACCCAGGAGTATTTAGCCTTGCAAAGTGGTCC 6513418 >seq10 Length=31890735 Score = 77.0 bits (84), Expect = 8e-12 Identities = 85/112 (76%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || | |||||| | ||||||||||| || | | |||||| Sbjct 1667941 CTCCCACTGCTTGGGAGCTCATAGTTTCATGTTCTATTTCACTATCCGAT-GGAGGTTCT 1667999 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||| ||||| ||||| ||||||| ||||||||| | || | ||||||| Sbjct 1668000 TTTCACCTTTTCCTCATGGTACTACTTCACTATCAGACACCAAAAAGTATTT 1668051 >seq25041 Length=5667 Score = 75.2 bits (82), Expect = 3e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 || |||||| ||||||||||||||||| |||| ||||||||| ||| ||||||||| Sbjct 3310 GTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCACCGGTATTTAGC 3369 Query 365 CTTGGA 370 |||||| Sbjct 3370 CTTGGA 3375 >seq13536 Length=5117 Score = 75.2 bits (82), Expect = 3e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 || |||||| ||||||||||||||||| |||| ||||||||| ||| ||||||||| Sbjct 4306 GTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCACCGGTATTTAGC 4365 Query 365 CTTGGA 370 |||||| Sbjct 4366 CTTGGA 4371 >seq2879 Length=54927 Score = 75.2 bits (82), Expect = 3e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 || |||||| ||||||||||||||||| |||| ||||||||| ||| ||||||||| Sbjct 27712 GTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCATCGGTATTTAGC 27771 Query 365 CTTGGA 370 |||||| Sbjct 27772 CTTGGA 27777 >seq2260 Length=73924 Score = 75.2 bits (82), Expect = 3e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| |||||||||||| |||| |||| ||||||||| ||| ||||||||| Sbjct 3892 GTTCTTTTCATCTTTCCCTCACGATACTTGTTCGCTATCGGTCTCTCACCGGTATTTAGC 3951 Query 365 CTTGGA 370 |||||| Sbjct 3952 CTTGGA 3957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241102602624