Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq40061 219 8e-55 seq1093 143 5e-32 seq46 127 4e-27 seq98 120 6e-25 seq9 114 3e-23 seq4 109 1e-21 seq52 105 1e-20 seq5 78.8 2e-12 >seq40061 Length=156973 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 102734 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 102675 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 102674 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 102615 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 102614 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 102555 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 102554 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAAC 102511 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 102510 CGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 102452 Query 300 CCACT 304 ||||| Sbjct 102451 CCACT 102447 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 139432 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 139491 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 139492 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 139551 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 139552 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 139611 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 139612 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAAC 139655 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 139656 CGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 139714 Query 300 CCACT 304 ||||| Sbjct 139715 CCACT 139719 >seq1093 Length=159761 Score = 143 bits (158), Expect = 5e-32 Identities = 133/169 (79%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||| | |||| ||||||| || | | ||||| ||||||| |||||||||| Sbjct 20573 GCTTCGTCAAGCTTTCGCCCATTGCAAAAAACTCTCCACTACTGCCTCTTGTAGGAGTCT 20632 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| |||||||| || | ||| |||| || Sbjct 20633 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGTTACTGATCATCAC 20692 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 |||||| |||||| ||||||||||| |||||| | | |||||| || Sbjct 20693 CTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGATGTGAGCCCCTC 20741 >seq46 Length=1555977 Score = 127 bits (140), Expect = 4e-27 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||| | |||||| Sbjct 381710 GCTGGATCGGGCTTTCACCCATTGTCCAAGATTCCCCACTGCTGCCCCCCATGGGAGTCC 381651 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||| |||||||| | |||| | || | |||| ||| | | Sbjct 381650 GGGCCGTGTCTCAGTCCTAATGTGGCTGATCAATCAAAAAGATCAGCTAAGCATCATTTG 381591 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || |||||| |||||||||||||| Sbjct 381590 CTTGGTCAGCCTTTATCTGACCAACTACCTAAT 381558 >seq98 Length=870214 Score = 120 bits (132), Expect = 6e-25 Identities = 125/163 (77%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| |||||| || || | |||||||||| || | || |||||||||||| Sbjct 629879 TCAGGCTTTCGTCCATTGCAGAAAATTCTCCACTGCTGCTTCGCATAAGAGTCTGGGCCG 629938 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||||||| | | || | ||| |||||| | || |||| |||| || ||||| Sbjct 629939 TGTCTCAGTCCCAGTATAGCTGATCATCCTCTCGGACCACCTACTGATCATCATTTTGGT 629998 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 ||||||| |||| |||||| |||||| | ||||||| || Sbjct 629999 AAGCTATTACCTCA-CAACTAGCTAATCAGATACGAGCCCCTC 630040 Score = 73.4 bits (80), Expect = 8e-11 Identities = 66/82 (80%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 223 TATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACG 282 |||| ||||||||| ||||| || ||| |||| |||| ||||| ||||| || | | Sbjct 629551 TATGGGGTATTAGCAACCGTTTTCAGTTGTTGTTCCCCTCTCAAAGGTAGGTT-CTTATG 629493 Query 283 TGTTACTCACCCGTCCGCCACT 304 ||||||||||||||||||||| Sbjct 629492 CGTTACTCACCCGTCCGCCACT 629471 >seq9 Length=38056896 Score = 114 bits (126), Expect = 3e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 49 TGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGT 108 |||||||||||||||||||| ||||||||||||| || |||||| | ||| |||||| | Sbjct 16670480 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTCTCAGTGTGGCTGATCATCCTCTCGGA 16670421 Query 109 CCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCT 156 || |||| |||| ||| |||||| |||||| ||||||||||| || Sbjct 16670420 CCAGCTATTGATCATCGTCTTGGTAAGCTATTGCCTCACCAACTAGCT 16670373 Score = 91.5 bits (100), Expect = 3e-16 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| || | |||||| || || | | ||| |||||||| ||| Sbjct 17176289 GGCATTGCTCCGTCAGGCTTCCATCCATTGCAAAAAATTCTCTACTAATGCCTCCCATAG 17176348 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||| | ||||| ||| | |||||| | ||| |||| | || |||| || Sbjct 17176349 GAGTCTGGGTCATGTCTTAGTTCTAATGTGTTTGATCATTCTCTTGGACCAGCTATTAAT 17176408 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 | || |||||| |||||| ||||||||||| |||||| Sbjct 17176409 CATCACCTTGGTAAGCTATTGCCTCACCAACTAGCTAATC 17176448 >seq4 Length=57251647 Score = 109 bits (120), Expect = 1e-21 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 48 CTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAG 107 |||||| |||| ||||| ||||| ||||| |||||||| ||||| | ||| ||||| | Sbjct 25336358 CTGCCTTCCGTGGGAGTTTGGGCTGTGTCACAGTCCCAGTGTGGTTGATCATCCTCTTGG 25336299 Query 108 TCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCG 167 || |||| |||| ||| |||||| |||||| ||||||||||| |||||| | | || Sbjct 25336298 ACCAGCTATTGATCATCGTCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGGCACG 25336239 Query 168 AGCCC 172 ||||| Sbjct 25336238 AGCCC 25336234 >seq52 Length=1422267 Score = 105 bits (116), Expect = 1e-20 Identities = 164/232 (71%), Gaps = 18/232 (8%) Strand=Plus/Plus Query 74 GTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTG 133 |||||||||||| |||||| | ||| |||||| | || ||||| |||| | | |||||| Sbjct 476828 GTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATTGCCTTGGTA 476887 Query 134 GGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCAT-CTTTCAGCGATAAATCTT 192 |||||| |||| |||||| |||||| | ||||||||| | || | ||| || | Sbjct 476888 AGCTATTGCCTCATCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGACGGATTCCTCCT 476947 Query 193 TGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGT 252 | ||| ||||| | | || | ||||||||| | |||||| || Sbjct 476948 T------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAACCATTTCCAGTTGT 476991 Query 253 TATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 | ||| ||| || || ||||| || ||| ||||||||||||||||||||| Sbjct 476992 TGTTCTCCTCCCAAGGGTAGGTT-CTTACGCGTTACTCACCCGTCCGCCACT 477042 >seq5 Length=51955539 Score = 78.8 bits (86), Expect = 2e-12 Identities = 76/98 (78%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||| |||| || |||| | || || | ||||| |||| |||||||| Sbjct 47242576 GGCATTGCTCTATCAGACTTTCGCCTATTGCGGAAAATTCTCCACTACTGCTTCCCGTAG 47242635 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCA 98 |||| || ||| | ||||||||||| |||||| | ||| Sbjct 47242636 GAGTTTGAGCCATATCTCAGTCCCAGTGTGGCTGATCA 47242673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998000030976