Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq40061 217 3e-54 seq8 140 8e-31 seq11 116 9e-24 seq2 95.1 3e-17 seq7 84.2 5e-14 >seq40061 Length=156973 Score = 217 bits (240), Expect = 3e-54 Identities = 300/409 (73%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 107664 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 107605 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 107604 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 107545 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| || | | ||| ||||| || || | | Sbjct 107544 ACATTCTCGCTTCCGCTTCG--TCCAC-ACCTGCTTGCGCGGGGGCTTC-CCTCTAAGGC 107489 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 107488 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 107433 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 107432 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 107374 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 107373 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 107314 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 107313 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 107265 Score = 217 bits (240), Expect = 3e-54 Identities = 300/409 (73%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 134502 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 134561 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 134562 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 134621 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| || | | ||| ||||| || || | | Sbjct 134622 ACATTCTCGCTTCCGCTTCG--TCCAC-ACCTGCTTGCGCGGGGGCTTC-CCTCTAAGGC 134677 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 134678 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 134733 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 134734 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 134792 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 134793 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 134852 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 134853 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 134901 >seq8 Length=40195399 Score = 140 bits (154), Expect = 8e-31 Identities = 116/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || || ||||||||||||||||||||||||||| |||||||||| | || ||||||||| Sbjct 29095565 CTCGATCAGTGAGCTATTACGCACTCTTTCAAGAGTGGCTGCTTCTAGGCAAACCTCCTG 29095506 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 | ||||| ||| | | || |||||| || |||| || |||||||||||||||| | Sbjct 29095505 GCTGTCTCTGCACCCCTACCTCCTTTATCATTGAGCGGTCATTTAGGGGCCTTAGCTGGT 29095446 Query 379 GATCTGGGCTGTTTCCCTCTCG 400 |||| | |||||||||||||| Sbjct 29095445 GATCCAGACTGTTTCCCTCTCG 29095424 >seq11 Length=30068910 Score = 116 bits (128), Expect = 9e-24 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 |||||||||||| ||| |||| ||||| | ||| || | | | |||| || | Sbjct 14633364 CCACAGCTTCGGTAGATCGCTTA-GCCCCATT-CATCTTCAGTACAAGAGCACTCGATTA 14633307 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||| | ||||||||||||| ||||||| ||| | || || ||||||||||||| Sbjct 14633306 GTGAGCTATCATGCACTCTTTCAAGAATGGCTGGTTCTAGGCAAATCTCCTGGTTGTCTG 14633247 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | || ||||| ||||||| | ||||||||||||||| | ||| || Sbjct 14633246 TGCACTGCTACCTCCTTCATCACTGAGCAGTTATTTAGGGGCCTTAGCTAGTAATCCGGA 14633187 Query 387 CTGTTTCCCTCTC 399 |||||||||||| Sbjct 14633186 TTGTTTCCCTCTC 14633174 >seq2 Length=65558141 Score = 95.1 bits (104), Expect = 3e-17 Identities = 135/186 (73%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||| | ||| |||| | || | | ||| |||| || | |||| || || Sbjct 6512645 CCACAGCTTCGACAGATCGCTTA-GTCCTGTT-CATCTTCGGTGCAAGAGCACTCGATCA 6512702 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||||| |||||||||||| || || |||| |||| || ||| ||| | | | Sbjct 6512703 ATGAGCTATTACATACTCTTTCAAGGGTG-CTACTTCTAAGCAAATCTCTTGGCTATTTC 6512761 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 | | | | || || ||| ||||| || |||||||||||||||| ||||| | | Sbjct 6512762 TGTACCCCTACCTCTTTTATCACTGGCCGGTCATTTAGGGGCCTTAGCTGGTGATCCGAG 6512821 Query 387 CTGTTT 392 |||||| Sbjct 6512822 CTGTTT 6512827 Score = 82.4 bits (90), Expect = 2e-13 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 258 ACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCT 317 |||||| ||||||||||||| ||||||||||||| || |||||| | || || || Sbjct 6463770 ACTTGATTAGTGAGCTATTACACACTCTTTCAAGGGTGATTGCTTCTAGAAAAATCTTCT 6463829 Query 318 GGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGA 377 | | ||| ||| | || |||||| || ||| || | ||| |||||| ||| Sbjct 6463830 AGCTATCTTTGCACCCTTACCTCCTTTATCATTGACCGGTCATTAAGGAGCCTTAACTGG 6463889 Query 378 TGATCTGGGCTGTTTCCCTCTCG 400 ||||| | |||||||||||||| Sbjct 6463890 TGATCCAGACTGTTTCCCTCTCG 6463912 >seq7 Length=43454766 Score = 84.2 bits (92), Expect = 5e-14 Identities = 107/147 (73%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 257 CACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGG----CTGCTTCCAAGCCAAC 312 |||| | |||||| |||||| ||||||||||||| ||| ||||||| | | || Sbjct 35515011 CACTCAATCAGTGAACTATTATGCACTCTTTCAAGAATGCATGACTGCTTCTAGGTAAAT 35515070 Query 313 CTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTA 372 |||||| ||||| ||| | | ||||| ||| || | || |||| ||||||| Sbjct 35515071 CTCCTGACTGTCTCAGCATTCCTATCCCCTTTATCACCAAGCAATCATTTAGAGGCCTTA 35515130 Query 373 GCTGATGATCTGGGCTGTTTCCCTCTC 399 ||| ||||| ||||||||||||||| Sbjct 35515131 CCTGGTGATCCAGGCTGTTTCCCTCTC 35515157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177128241664