Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13]
40,061 sequences; 1,535,178,229 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq40061 217 3e-54
seq8 140 8e-31
seq11 116 9e-24
seq2 95.1 3e-17
seq7 84.2 5e-14
>seq40061
Length=156973
Score = 217 bits (240), Expect = 3e-54
Identities = 300/409 (73%), Gaps = 18/409 (4%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 107664 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 107605
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 107604 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 107545
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || ||||| || | | ||| ||||| || || | |
Sbjct 107544 ACATTCTCGCTTCCGCTTCG--TCCAC-ACCTGCTTGCGCGGGGGCTTC-CCTCTAAGGC 107489
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | || ||| | ||||||||||||| ||| |||| |
Sbjct 107488 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 107433
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| ||||||| | | || || |||||||||||||||||||||||||||
Sbjct 107432 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 107374
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||
Sbjct 107373 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 107314
Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 107313 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 107265
Score = 217 bits (240), Expect = 3e-54
Identities = 300/409 (73%), Gaps = 18/409 (4%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 134502 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 134561
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 134562 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 134621
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || ||||| || | | ||| ||||| || || | |
Sbjct 134622 ACATTCTCGCTTCCGCTTCG--TCCAC-ACCTGCTTGCGCGGGGGCTTC-CCTCTAAGGC 134677
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | || ||| | ||||||||||||| ||| |||| |
Sbjct 134678 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 134733
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| ||||||| | | || || |||||||||||||||||||||||||||
Sbjct 134734 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 134792
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||
Sbjct 134793 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 134852
Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 134853 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 134901
>seq8
Length=40195399
Score = 140 bits (154), Expect = 8e-31
Identities = 116/142 (82%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318
|| || ||||||||||||||||||||||||||| |||||||||| | || |||||||||
Sbjct 29095565 CTCGATCAGTGAGCTATTACGCACTCTTTCAAGAGTGGCTGCTTCTAGGCAAACCTCCTG 29095506
Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378
| ||||| ||| | | || |||||| || |||| || |||||||||||||||| |
Sbjct 29095505 GCTGTCTCTGCACCCCTACCTCCTTTATCATTGAGCGGTCATTTAGGGGCCTTAGCTGGT 29095446
Query 379 GATCTGGGCTGTTTCCCTCTCG 400
|||| | ||||||||||||||
Sbjct 29095445 GATCCAGACTGTTTCCCTCTCG 29095424
>seq11
Length=30068910
Score = 116 bits (128), Expect = 9e-24
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
|||||||||||| ||| |||| ||||| | ||| || | | | |||| || |
Sbjct 14633364 CCACAGCTTCGGTAGATCGCTTA-GCCCCATT-CATCTTCAGTACAAGAGCACTCGATTA 14633307
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326
||||||||| | ||||||||||||| ||||||| ||| | || || |||||||||||||
Sbjct 14633306 GTGAGCTATCATGCACTCTTTCAAGAATGGCTGGTTCTAGGCAAATCTCCTGGTTGTCTG 14633247
Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386
||| | || ||||| ||||||| | ||||||||||||||| | ||| ||
Sbjct 14633246 TGCACTGCTACCTCCTTCATCACTGAGCAGTTATTTAGGGGCCTTAGCTAGTAATCCGGA 14633187
Query 387 CTGTTTCCCTCTC 399
||||||||||||
Sbjct 14633186 TTGTTTCCCTCTC 14633174
>seq2
Length=65558141
Score = 95.1 bits (104), Expect = 3e-17
Identities = 135/186 (73%), Gaps = 3/186 (2%)
Strand=Plus/Plus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
||||||||||| | ||| |||| | || | | ||| |||| || | |||| || ||
Sbjct 6512645 CCACAGCTTCGACAGATCGCTTA-GTCCTGTT-CATCTTCGGTGCAAGAGCACTCGATCA 6512702
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326
||||||||||| |||||||||||| || || |||| |||| || ||| ||| | | |
Sbjct 6512703 ATGAGCTATTACATACTCTTTCAAGGGTG-CTACTTCTAAGCAAATCTCTTGGCTATTTC 6512761
Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386
| | | | || || ||| ||||| || |||||||||||||||| ||||| | |
Sbjct 6512762 TGTACCCCTACCTCTTTTATCACTGGCCGGTCATTTAGGGGCCTTAGCTGGTGATCCGAG 6512821
Query 387 CTGTTT 392
||||||
Sbjct 6512822 CTGTTT 6512827
Score = 82.4 bits (90), Expect = 2e-13
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 258 ACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCT 317
|||||| ||||||||||||| ||||||||||||| || |||||| | || || ||
Sbjct 6463770 ACTTGATTAGTGAGCTATTACACACTCTTTCAAGGGTGATTGCTTCTAGAAAAATCTTCT 6463829
Query 318 GGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGA 377
| | ||| ||| | || |||||| || ||| || | ||| |||||| |||
Sbjct 6463830 AGCTATCTTTGCACCCTTACCTCCTTTATCATTGACCGGTCATTAAGGAGCCTTAACTGG 6463889
Query 378 TGATCTGGGCTGTTTCCCTCTCG 400
||||| | ||||||||||||||
Sbjct 6463890 TGATCCAGACTGTTTCCCTCTCG 6463912
>seq7
Length=43454766
Score = 84.2 bits (92), Expect = 5e-14
Identities = 107/147 (73%), Gaps = 4/147 (3%)
Strand=Plus/Plus
Query 257 CACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGG----CTGCTTCCAAGCCAAC 312
|||| | |||||| |||||| ||||||||||||| ||| ||||||| | | ||
Sbjct 35515011 CACTCAATCAGTGAACTATTATGCACTCTTTCAAGAATGCATGACTGCTTCTAGGTAAAT 35515070
Query 313 CTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTA 372
|||||| ||||| ||| | | ||||| ||| || | || |||| |||||||
Sbjct 35515071 CTCCTGACTGTCTCAGCATTCCTATCCCCTTTATCACCAAGCAATCATTTAGAGGCCTTA 35515130
Query 373 GCTGATGATCTGGGCTGTTTCCCTCTC 399
||| ||||| |||||||||||||||
Sbjct 35515131 CCTGGTGATCCAGGCTGTTTCCCTCTC 35515157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177128241664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |