Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq40061 122 7e-26 seq9 87.8 1e-15 seq541 86.0 5e-15 seq1 77.0 3e-12 >seq40061 Length=156973 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 103633 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 103574 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 103573 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 103514 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 103513 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 103474 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 138533 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 138592 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 138593 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 138652 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 138653 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 138692 >seq9 Length=38056896 Score = 87.8 bits (96), Expect = 1e-15 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||| || || ||||| | | | | ||| | ||| ||| ||||||| ||||||| | Sbjct 16677790 GAGTTGTAGCCTGCAATCTGAATTGAGGATGGATTTT-TGGAGTTAGCTCACCCTCGCAG 16677732 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || | || ||| | |||||||| ||| ||| || | ||||| || ||| Sbjct 16677731 GATCGCAACTCTTTGTCTCGGCCATTGTACCACGGGTGTCGCTCAGGGCATAAAGGGCAT 16677672 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||| || || |||| Sbjct 16677671 GATGACTTGACGTCATCCTCACCTTCCTCTGGCTTATCAC 16677632 >seq541 Length=279719 Score = 86.0 bits (94), Expect = 5e-15 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 4 AGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 |||||||| |||||||| | | | ||| | ||| ||| |||||| |||||| | | Sbjct 237240 AGTTGCAGCCTACAATCTGATATGAGGATGGATTTT-TGGAGGTAGCTCACCCTCGTGAG 237298 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | | | ||| ||| | |||||||| || |||| |||| |||||||| |||| Sbjct 237299 ATCGTGATCCTTTGTTTCGGCCATTGTAGCACATGTGTCGCCCAGGGCATAAGGGGCATG 237358 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCC 151 | ||||||||||||||| ||||||||||| Sbjct 237359 ATGACTTGACGTCATCCTCACCTTCCTCC 237387 >seq1 Length=68435666 Score = 77.0 bits (84), Expect = 3e-12 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 45 TTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCC 104 ||||||| |||||||||| | | | |||| ||| | |||||||| | ||||| | Sbjct 48860138 TTAGCTCACCCTCGCGGGATCGTGACCCTTTGTCTCAGCCATTGTAGCATGTGTGTCATC 48860079 Query 105 CTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCC 151 | ||||| | ||||| ||||||||||||||| ||||||||||| Sbjct 48860078 CAGGGTATAAGAGGCATGATGACTTGACGTCATCCTCACCTTCCTCC 48860032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415838554170