Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13]
40,061 sequences; 1,535,178,229 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq2260 120 3e-25
seq1607 113 5e-23
seq2908 98.7 1e-18
seq5 98.7 1e-18
>seq2260
Length=73924
Score = 120 bits (132), Expect = 3e-25
Identities = 137/179 (77%), Gaps = 5/179 (3%)
Strand=Plus/Minus
Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72
|||||||||| ||||||||| | |||||||| ||| |||| | |||||||| |||||
Sbjct 6616 TTACTTTGAAGAAATTAGAGTGATCAAAGCAAGCCCACGCTCTGGATACATTAGCATGGG 6557
Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT-TTCTAGGACCGCCCGTAATGATA 131
|||| | | |||| | |||| ||||| ||| || ||| || | | ||||||||
Sbjct 6556 ATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGAGATCGGA--GTAATGATT 6500
Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190
|| | ||| ||||||||| | ||||| || |||| |||||||||||||||||||||
Sbjct 6499 AAAAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 6441
>seq1607
Length=110441
Score = 113 bits (124), Expect = 5e-23
Identities = 134/178 (75%), Gaps = 3/178 (2%)
Strand=Plus/Plus
Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72
||||||||| |||||||||| | |||||||| ||| ||||| | |||||||| |||||
Sbjct 41024 TTACTTTGAGAAAATTAGAGTGCTCAAAGCAAGCCCATGCTCTGGATACATTAGCATGGG 41083
Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132
|||||| |||||| | || | ||||| || || | ||| |||||||| |
Sbjct 41084 ATAATATCATAGGATTT-CGATCCTATTGTGCTGGCCTTCGGGATTAGA-GTAATGATTA 41141
Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190
| | ||| |||| |||| | ||||| || |||| |||||||||||||||||||||
Sbjct 41142 AGAGGGACAGTCAGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 41199
>seq2908
Length=48135
Score = 98.7 bits (108), Expect = 1e-18
Identities = 131/178 (74%), Gaps = 3/178 (2%)
Strand=Plus/Plus
Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72
|||||||||| ||||||||| | |||||||| ||| |||| | |||||||| |||||
Sbjct 16491 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCACGCTCTGGATACATTAGCATGGG 16550
Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132
|||||| | |||| | |||| || || || || | |||| |||||||| |
Sbjct 16551 ATAATATCACAGGATTT-CGGTCCTGTTGTGCTGGCCTTCAGGATTAGA-GTAATGATTA 16608
Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190
| | ||| |||| ||| | ||||| || |||| ||||||||||||| |||||||
Sbjct 16609 AGAGGGACAGTCAGGGTCATTCGTATTTCATAGTCAGAGGTGAAATTCTTAGATTTAT 16666
>seq5
Length=51955539
Score = 98.7 bits (108), Expect = 1e-18
Identities = 135/182 (74%), Gaps = 10/182 (5%)
Strand=Plus/Minus
Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTACCATG 70
|||||||||| |||||||| |||||||||| ||| || | | |||||||| ||||
Sbjct 21409179 TTACTTTGAAGAAATTAGAATGTTCAAAGCAAGCCCACATT--TTGGATACATTAGCATG 21409122
Query 71 GAATAATAGAATAGGACGTGCGGTTCT-ATTTTGTAGGT-TTCTAGGACCGCCCGTAATG 128
| |||| || |||||| | ||| || ||| ||| || ||| || | | ||||||
Sbjct 21409121 GGATAACAGTATAGGATTTT-GGTCCTTATTGTGTTGGCATTCGAGATCAGA--GTAATG 21409065
Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188
|| || | |||||| | ||| | ||||| || |||| |||||||||||||||||||
Sbjct 21409064 ATTAAGAGGGATAGCCAGGGACATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 21409005
Query 189 AT 190
||
Sbjct 21409004 AT 21409003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511801297440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |