Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2260 120 3e-25 seq1607 113 5e-23 seq2908 98.7 1e-18 seq5 98.7 1e-18 >seq2260 Length=73924 Score = 120 bits (132), Expect = 3e-25 Identities = 137/179 (77%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| |||| | |||||||| ||||| Sbjct 6616 TTACTTTGAAGAAATTAGAGTGATCAAAGCAAGCCCACGCTCTGGATACATTAGCATGGG 6557 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT-TTCTAGGACCGCCCGTAATGATA 131 |||| | | |||| | |||| ||||| ||| || ||| || | | |||||||| Sbjct 6556 ATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGAGATCGGA--GTAATGATT 6500 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 6499 AAAAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 6441 >seq1607 Length=110441 Score = 113 bits (124), Expect = 5e-23 Identities = 134/178 (75%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 ||||||||| |||||||||| | |||||||| ||| ||||| | |||||||| ||||| Sbjct 41024 TTACTTTGAGAAAATTAGAGTGCTCAAAGCAAGCCCATGCTCTGGATACATTAGCATGGG 41083 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||||| |||||| | || | ||||| || || | ||| |||||||| | Sbjct 41084 ATAATATCATAGGATTT-CGATCCTATTGTGCTGGCCTTCGGGATTAGA-GTAATGATTA 41141 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| |||| |||| | ||||| || |||| ||||||||||||||||||||| Sbjct 41142 AGAGGGACAGTCAGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 41199 >seq2908 Length=48135 Score = 98.7 bits (108), Expect = 1e-18 Identities = 131/178 (74%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| |||| | |||||||| ||||| Sbjct 16491 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCCACGCTCTGGATACATTAGCATGGG 16550 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||||| | |||| | |||| || || || || | |||| |||||||| | Sbjct 16551 ATAATATCACAGGATTT-CGGTCCTGTTGTGCTGGCCTTCAGGATTAGA-GTAATGATTA 16608 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| |||| ||| | ||||| || |||| ||||||||||||| ||||||| Sbjct 16609 AGAGGGACAGTCAGGGTCATTCGTATTTCATAGTCAGAGGTGAAATTCTTAGATTTAT 16666 >seq5 Length=51955539 Score = 98.7 bits (108), Expect = 1e-18 Identities = 135/182 (74%), Gaps = 10/182 (5%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTACCATG 70 |||||||||| |||||||| |||||||||| ||| || | | |||||||| |||| Sbjct 21409179 TTACTTTGAAGAAATTAGAATGTTCAAAGCAAGCCCACATT--TTGGATACATTAGCATG 21409122 Query 71 GAATAATAGAATAGGACGTGCGGTTCT-ATTTTGTAGGT-TTCTAGGACCGCCCGTAATG 128 | |||| || |||||| | ||| || ||| ||| || ||| || | | |||||| Sbjct 21409121 GGATAACAGTATAGGATTTT-GGTCCTTATTGTGTTGGCATTCGAGATCAGA--GTAATG 21409065 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | |||||| | ||| | ||||| || |||| ||||||||||||||||||| Sbjct 21409064 ATTAAGAGGGATAGCCAGGGACATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 21409005 Query 189 AT 190 || Sbjct 21409004 AT 21409003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511801297440