Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq40061 264 2e-68 seq369 159 5e-37 seq2 159 5e-37 seq1 125 1e-26 seq10 114 2e-23 seq3 114 2e-23 seq12095 105 1e-20 >seq40061 Length=156973 Score = 264 bits (292), Expect = 2e-68 Identities = 223/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 109057 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 108998 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 108997 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 108938 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||| | |||||| ||||||||||||||| || Sbjct 108937 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCGCACCGGATATGGACCGAACTGTCTCACG 108878 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 108877 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 108818 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 108817 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 108785 Score = 264 bits (292), Expect = 2e-68 Identities = 223/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 133109 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 133168 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 133169 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 133228 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||| | |||||| ||||||||||||||| || Sbjct 133229 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCGCACCGGATATGGACCGAACTGTCTCACG 133288 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 133289 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 133348 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 133349 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 133381 >seq369 Length=445541 Score = 159 bits (176), Expect = 5e-37 Identities = 193/260 (74%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGG-CA 75 ||||||||| |||||| |||| || |||| ||| |||||| | | ||| || Sbjct 264748 CTTAGATGCTTTCAGCAGTTATTTGCTCTGCACTTGGCTACCCAGCGTTTATCGTGGGCA 264689 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | ||||||| |||||||| | ||| | | | |||||||||||||||| || |||| Sbjct 264688 CGATAACTGGTACACCAGAGATGCATCCTTACAG-TCCTCTCGTACTAAGGCAAGGTCCT 264630 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| || ||| || | | ||| |||||||| ||||| ||||| |||| ||| | Sbjct 264629 CTCAATGCTCGAACGTCCGCATCAAATATGGACCGAATTGTCTAGCGACATTCTAAACTC 264570 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| || |||||||| ||||| ||||||||| |||| || |||| |||||| || Sbjct 264569 AGCTCACGTACCACTTTAATGAGCGAATAGCCCAACCTTTGGAACATACTACAGCCCTAG 264510 Query 256 GATGAGACGAGCCGACATCG 275 | || ||||||||| || Sbjct 264509 ATGGCGAAGAGCCGACAGCG 264490 >seq2 Length=65558141 Score = 159 bits (176), Expect = 5e-37 Identities = 153/196 (78%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 80 AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCA 139 || ||||||||||||| | ||||| || || | ||||| ||||| ||| || |||||| | Sbjct 6511122 AATTGGTGCACCAGAGATGTGTCCTTCTCGATTCTCTCATACTAGGGAAAGGTCCTCTAA 6511181 Query 140 AATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCT 199 | ||| || | || |||||| | || |||||||||||||| ||||||||||| ||| Sbjct 6511182 ATGCTCCAACATCTACATCGGATATGAACTGAACTGTCTCGCGATGTTCTGAACCCCGCT 6511241 Query 200 CGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATG 259 | ||| | ||||||||| |||| ||||||||||||| | |||| |||||||| | Sbjct 6511242 CACGTACTGCTTTAATGGACGAATTGCCCAACCCTTGGAATATACTATAGCCCCAGTTGG 6511301 Query 260 AGACGAGCCGACATCG 275 || |||||||||||| Sbjct 6511302 TGAAGAGCCGACATCG 6511317 Score = 82.4 bits (90), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 35 TTATCCCTTCCAAACTTAGCTTCCCAGC---TATGCACTTGGCAGTACAACTGGTGCACC 91 |||| | ||||| |||| ||| ||| | ||| || | |||| |||| || || | Sbjct 51212323 TTATTCATTCCACACTTGGCTATCCAACATTTAT-CA-TAGGCACGGTAACTAGTACATC 51212380 Query 92 AGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGC 151 |||||| ||||| || | | |||| |||||| | | | |||| || ||| | || Sbjct 51212381 AGAGGTATGTCCTTCTCTATTCTCTTGTACTAGAAAAAAATTCTCTTAATATTCTAATGC 51212440 Query 152 CCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTT 211 | |||||| || |||||| || | | || | ||||| | ||||| || || ||| Sbjct 51212441 TTGCATCGGATATAGATCGAACTATCGCACAACATGCTGAATCTAGCTCATGTACCGCTT 51212500 Query 212 TAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 |||||| ||||||||||| | ||| || |||| ||||| Sbjct 51212501 TAATGGATGAACAGCCCAATCTTTGAAACATACTACAGCC 51212540 >seq1 Length=68435666 Score = 125 bits (138), Expect = 1e-26 Identities = 146/197 (74%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 83 TGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAAT 142 |||| ||||| ||||| ||| ||| ||||||| |||||| || ||||||| || | Sbjct 39560637 TGGTACACCATAGGTTGACCCAACCCAGTCCTCTAGTACTAGGGTTGGCTCCTCGCAGTT 39560696 Query 143 TTCCT----ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGC 198 ||| || || | | |||||| || || ||| || ||| ||| | |||||| | Sbjct 39560697 CTCCCTTTAACACCAATGGTAGATAGGAACAAAATTGTTTCACGATGTTTTAAACCCAAC 39560756 Query 199 TCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGAT 258 || ||| || |||| || | |||||| || |||||||||||||| ||| | ||||||||| Sbjct 39560757 TCACGTACCACTTTCATCGACGAACAACCGAACCCTTGGGACCTTCTTTAACCCCAGGAT 39560816 Query 259 GAGACGAGCCGACATCG 275 | || ||| |||||||| Sbjct 39560817 GTGATGAGTCGACATCG 39560833 >seq10 Length=31890735 Score = 114 bits (126), Expect = 2e-23 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217 |||||| ||| |||||| |||||| | ||| |||||||||||| ||| || ||||||||| Sbjct 19009498 CGGATATGGATCGAACTATCTCGCAATGTTTTGAACCCAGCTCACGTACCACTTTAATGG 19009439 Query 218 GCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||||||| |||| | | |||| ||| | |||| | | |||||||||||| Sbjct 19009438 GCGAACAGCCCAATCCTTAGAATATACTACAGTCTCAGGTGGCAAAGAGCCGACATCG 19009381 >seq3 Length=60060032 Score = 114 bits (126), Expect = 2e-23 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217 |||||| ||||||||||||||| ||| |||| ||||||||||| ||| | ||||||||| Sbjct 19849696 CGGATATGGACCGAACTGTCTCACGAAGTTCGGAACCCAGCTCACGTACTGCTTTAATGG 19849637 Query 218 GCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | ||||| ||||| |||||| || | || ||||| | | | || |||||||||||| Sbjct 19849636 GTGAACAACCCAATCCTTGGAACATGCTATAGCCCTAAGTGGCGAAGAGCCGACATCG 19849579 >seq12095 Length=3636 Score = 105 bits (116), Expect = 1e-20 Identities = 161/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 49 CTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCC 107 ||| ||| || ||| | | | || |||| | ||||||| || | |||| || | | Sbjct 2714 CTTGGCTACCTAGCATTTACTCTGGGCACGATAACTGGTATACTAAAGGTGCAGCCTTTC 2773 Query 108 CGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGA 167 || | ||||| ||| | | || | ||||||| || | | || | |||||| | Sbjct 2774 CGATTCTCTCATACCAGAAAAAGATTCTCTCAATACTCTAATGTCCGCACCGGATATAAA 2833 Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 ||||||||||| ||| || |||||||||||| | | || ||||||||||||||||| | Sbjct 2834 TCGAACTGTCTCACGATATTTTGAACCCAGCTCACATACCACTTTAATGGGCGAACAGTC 2893 Query 228 CAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||| || | | ||| | || | | || ||||||| |||| Sbjct 2894 CAACCCTTGGAACACAGTACAGTCTCAAGTGGCGAAGAGCCGATATCG 2941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780496978596