Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13]
40,061 sequences; 1,535,178,229 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq40061 275 2e-71
seq1093 194 4e-47
seq98 149 2e-33
seq541 147 5e-33
seq9 127 5e-27
seq46 111 4e-22
seq4 105 2e-20
seq52 104 6e-20
seq5 98.7 2e-18
>seq40061
Length=156973
Score = 275 bits (304), Expect = 2e-71
Identities = 308/410 (75%), Gaps = 30/410 (7%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||||||| | | |||||||||| ||| | |||||||| ||||||||
Sbjct 102765 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 102706
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 102705 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 102646
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | |||
Sbjct 102645 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 102586
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
||||||||||| | | | | ||| || | || ||| ||| ||||
Sbjct 102585 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 102537
Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304
|| | | | || | ||||||||| |||||||||||| ||| | ||||||| ||||
Sbjct 102536 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCA 102479
Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364
| ||| | | |||||||||||||||||||| ||| || || ||||
Sbjct 102478 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 102433
Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||| |||||||||||||||| || ||||||||||||||| |||||
Sbjct 102432 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 102386
Score = 275 bits (304), Expect = 2e-71
Identities = 308/410 (75%), Gaps = 30/410 (7%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||||||| | | |||||||||| ||| | |||||||| ||||||||
Sbjct 139401 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 139460
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 139461 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 139520
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | |||
Sbjct 139521 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 139580
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
||||||||||| | | | | ||| || | || ||| ||| ||||
Sbjct 139581 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 139629
Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304
|| | | | || | ||||||||| |||||||||||| ||| | ||||||| ||||
Sbjct 139630 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCA 139687
Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364
| ||| | | |||||||||||||||||||| ||| || || ||||
Sbjct 139688 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 139733
Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||| |||||||||||||||| || ||||||||||||||| |||||
Sbjct 139734 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 139780
>seq1093
Length=159761
Score = 194 bits (214), Expect = 4e-47
Identities = 292/411 (71%), Gaps = 32/411 (8%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||||||| | | |||| || || ||| | ||| |||| ||||||||
Sbjct 20536 TTCACGACCCGTGGGCCTTCTACCTCCACGTGGTATTGCTTCGTCAAGCTTTCGCCCATT 20595
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| || | || ||||| ||||||| |||||||||||| |||||||||||| |||||||
Sbjct 20596 GCAAAAAACTCTCCACTACTGCCTCTTGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 20655
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| ||||||||||||||||| || |||| || ||| ||| || ||| || | |||
Sbjct 20656 GGCTGATCATCCTCTCAGACCAGTTACTGATCATCACCTTGGTAAGCTATTGCCTCACCA 20715
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
||||||||||| || || | | ||| ||| || ||| ||| ||||
Sbjct 20716 ACTAGCTAATCAGATGTGAGCCCCTCCTCAGGTG-GA---------TTCCTCCT-TTTGC 20764
Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304
|| | | ||| | ||||||||| ||| |||||||| || | |||||| || |
Sbjct 20765 TCCT--CAGCTTACGAGGTATTAGCAACCATTTCCAGTTATTGTTGCCCTCCCAAGGGTA 20822
Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364
| ||| | | ||||||||| |||||||| | ||| | || | |||||||
Sbjct 20823 GGTTCTTATGCGTTACTCACCTGTCCGCCAAT-------GAA--AACA--CCACTTCCTG 20871
Query 365 T-TACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
| || ||||||| |||||| || |||||||||| |||| |||||
Sbjct 20872 TCTA-------ACTTGCAGGTGTTAAGCATGCCGCCAGCATTCATCCTGAG 20915
>seq98
Length=870214
Score = 149 bits (164), Expect = 2e-33
Identities = 273/397 (69%), Gaps = 31/397 (8%)
Strand=Plus/Plus
Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70
||||| || ||||| | | | ||||||| ||| |||||||| || |||||| ||
Sbjct 629842 ACCCGTGGGTCTTCTACTTCTATGCGGCATTGCTCTGTCAGGCTTTCGTCCATTGCAGAA 629901
Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130
|||| |||||||||| || | || |||||||| |||||||||||| ||||| | ||||
Sbjct 629902 AATTCTCCACTGCTGCTTCGCATAAGAGTCTGGGCCGTGTCTCAGTCCCAGTATAGCTGA 629961
Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190
|||||||||| ||||| ||| |||| || | ||| || |||||| | ||||||||
Sbjct 629962 TCATCCTCTCGGACCACCTACTGATCATCATTTTGGTAAGCTATTACCTC-ACAACTAGC 630020
Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250
||||| || | | | ||| || | || ||| ||| |||| || |
Sbjct 630021 TAATCAGATACGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCA 630069
Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310
| | || ||||||||| || |||| |||| ||| | ||||||| || || |||
Sbjct 630070 GCC--TACAGGGTATTAGCAACTGTTTTCAGTTGTTGTTCCCCTCCCAAGGGTAGGTTCT 630127
Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370
| ||||||||||| || ||||||| ||| | || ||| ||| |
Sbjct 630128 TACGCATTACTCACCTGTTCGCCACT------AGAAATACCA-----CTTTTTGTCA--- 630173
Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCA 407
||||||||||||||| | |||| ||||||||||
Sbjct 630174 ---GACTTGCATGTGTTAAGTATGCCACCAGCGTTCA 630207
Score = 87.8 bits (96), Expect = 4e-15
Identities = 115/159 (72%), Gaps = 18/159 (11%)
Strand=Plus/Minus
Query 256 TATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGAC 315
|||| ||||||||| ||||||| |||| ||| | |||||| ||| || ||| | |
Sbjct 629551 TATGGGGTATTAGCAACCGTTTTCAGTTGTTGTTCCCCTCTCAAAGGTAGGTTCTTATGC 629492
Query 316 ATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGA 375
|||||||||||||||||||| ||| || || |||||| || |||
Sbjct 629491 GTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTCCT------GTCCGA 629449
Query 376 CTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
| ||||||||||| || |||||||||| |||| |||||
Sbjct 629448 C-TGCATGTGTTAAGCATGCCGCCAGCTTTCATCCTGAG 629411
>seq541
Length=279719
Score = 147 bits (162), Expect = 5e-33
Identities = 147/191 (77%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||||||| | | |||||||||| ||| | |||| ||| | | |||
Sbjct 238052 TTCACGACCCGTGGGCCTTCTACCTTCACGCGGCATTGCTCCGTCAGACTTTCATCTATT 238111
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| ||| |||| ||| |||| |||| |||||||||| | |||||||||||||||||
Sbjct 238112 GCACAAAATTCTCCATTGCTACCTCTTGTAGGAGTCTAGGTTATGTCTCAGTTCCAGTGT 238171
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| |||||||||| ||||||||| || ||| || | | || ||| || |||||
Sbjct 238172 GGCTGATCATCCTCTCGGACCAGCTACTAATTATCGTCTTGATAAGCTATTGCCTCGCCA 238231
Query 185 ACTAGCTAATC 195
|||| ||||||
Sbjct 238232 ACTAACTAATC 238242
>seq9
Length=38056896
Score = 127 bits (140), Expect = 5e-27
Identities = 93/108 (86%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 84 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGA 143
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||
Sbjct 16670480 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTCTCAGTGTGGCTGATCATCCTCTCGGA 16670421
Query 144 CCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCT 191
||||||| |||| ||| || ||| || ||| || | ||||||||||
Sbjct 16670420 CCAGCTATTGATCATCGTCTTGGTAAGCTATTGCCTCACCAACTAGCT 16670373
Score = 118 bits (130), Expect = 3e-24
Identities = 133/178 (75%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77
|||||||| | | || ||||| ||| | |||||||| | |||||| || |||| |
Sbjct 17176271 GGCCTTCTACCTCCATATGGCATTGCTCCGTCAGGCTTCCATCCATTGCAAAAAATTCTC 17176330
Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137
||| |||||||| ||||||||||| | ||||| ||||| | |||| || |||| ||
Sbjct 17176331 TACTAATGCCTCCCATAGGAGTCTGGGTCATGTCTTAGTTCTAATGTGTTTGATCATTCT 17176390
Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195
|| ||||||||| ||| || ||| ||| || ||| || | ||||||||||||||
Sbjct 17176391 CTTGGACCAGCTATTAATCATCACCTTGGTAAGCTATTGCCTCACCAACTAGCTAATC 17176448
>seq46
Length=1555977
Score = 111 bits (122), Expect = 4e-22
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 39 ATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAG 98
|| |||| ||| ||||| | |||||||| ||| |||||||||||||||| ||| | ||||
Sbjct 381713 ATTGCTGGATCGGGCTTTCACCCATTGTCCAAGATTCCCCACTGCTGCCCCCCATGGGAG 381654
Query 99 TCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158
|| || |||||||||||| | | |||||||| ||| | ||| |||||| | ||| |
Sbjct 381653 TCCGGGCCGTGTCTCAGTCCTAATGTGGCTGATCAATCAAAAAGATCAGCTAAGCATCAT 381594
Query 159 CGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194
|| ||| ||| ||| | ||||||| |||||
Sbjct 381593 TTGCTTGGTCAGCCTTTATCTGACCAACTACCTAAT 381558
>seq4
Length=57251647
Score = 105 bits (116), Expect = 2e-20
Identities = 91/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 83 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142
|||||| |||| ||||| ||| | ||||| |||| ||||||||| || ||||||||| |
Sbjct 25336358 CTGCCTTCCGTGGGAGTTTGGGCTGTGTCACAGTCCCAGTGTGGTTGATCATCCTCTTGG 25336299
Query 143 ACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195
|||||||| |||| ||| || ||| || ||| || | ||||||||||||||
Sbjct 25336298 ACCAGCTATTGATCATCGTCTTGGTAAGCTATTGCCTCACCAACTAGCTAATC 25336246
>seq52
Length=1422267
Score = 104 bits (114), Expect = 6e-20
Identities = 161/228 (71%), Gaps = 13/228 (6%)
Strand=Plus/Plus
Query 109 GTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTG 168
|||||||| |||||||||||| |||||||||| ||||||||| |||| | |||| |||
Sbjct 476828 GTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATTGCCTTGGTA 476887
Query 169 GGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGA 228
|| ||| || | ||||||||||||| | | | | ||| || | ||
Sbjct 476888 AGCTATTGCCTCATCAACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGACGGA 476939
Query 229 AGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTAT 288
||| ||| |||| || | | | || | ||||||||| ||| |||||||| ||| |
Sbjct 476940 --TTCCTCCT-TTTGCTCCTCAGCC--TACGGGGTATTAGCAACCATTTCCAGTTGTTGT 476994
Query 289 CCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACT 336
| ||||| || || ||| | | ||||||||||||||||||||
Sbjct 476995 TCTCCTCCCAAGGGTAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 477042
>seq5
Length=51955539
Score = 98.7 bits (108), Expect = 2e-18
Identities = 83/102 (81%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 34 GCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGT 93
||||||| ||| ||||| ||| |||| |||| | || |||| ||||| |||| ||||||
Sbjct 47242574 GCGGCATTGCTCTATCAGACTTTCGCCTATTGCGGAAAATTCTCCACTACTGCTTCCCGT 47242633
Query 94 AGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATC 135
|||||| || || | ||||||| |||||||||||| |||||
Sbjct 47242634 AGGAGTTTGAGCCATATCTCAGTCCCAGTGTGGCTGATCATC 47242675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1221910294336
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