Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq40061 275 2e-71 seq1093 194 4e-47 seq98 149 2e-33 seq541 147 5e-33 seq9 127 5e-27 seq46 111 4e-22 seq4 105 2e-20 seq52 104 6e-20 seq5 98.7 2e-18 >seq40061 Length=156973 Score = 275 bits (304), Expect = 2e-71 Identities = 308/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 102765 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 102706 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 102705 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 102646 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 102645 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 102586 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 102585 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 102537 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||||| ||| | ||||||| |||| Sbjct 102536 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCA 102479 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 102478 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 102433 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 102432 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 102386 Score = 275 bits (304), Expect = 2e-71 Identities = 308/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 139401 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 139460 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 139461 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 139520 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 139521 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 139580 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 139581 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 139629 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||||| ||| | ||||||| |||| Sbjct 139630 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCA 139687 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 139688 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 139733 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 139734 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 139780 >seq1093 Length=159761 Score = 194 bits (214), Expect = 4e-47 Identities = 292/411 (71%), Gaps = 32/411 (8%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||| || || ||| | ||| |||| |||||||| Sbjct 20536 TTCACGACCCGTGGGCCTTCTACCTCCACGTGGTATTGCTTCGTCAAGCTTTCGCCCATT 20595 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | || | || ||||| ||||||| |||||||||||| |||||||||||| ||||||| Sbjct 20596 GCAAAAAACTCTCCACTACTGCCTCTTGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 20655 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| ||||||||||||||||| || |||| || ||| ||| || ||| || | ||| Sbjct 20656 GGCTGATCATCCTCTCAGACCAGTTACTGATCATCACCTTGGTAAGCTATTGCCTCACCA 20715 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| || || | | ||| ||| || ||| ||| |||| Sbjct 20716 ACTAGCTAATCAGATGTGAGCCCCTCCTCAGGTG-GA---------TTCCTCCT-TTTGC 20764 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | ||| | ||||||||| ||| |||||||| || | |||||| || | Sbjct 20765 TCCT--CAGCTTACGAGGTATTAGCAACCATTTCCAGTTATTGTTGCCCTCCCAAGGGTA 20822 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | ||||||||| |||||||| | ||| | || | ||||||| Sbjct 20823 GGTTCTTATGCGTTACTCACCTGTCCGCCAAT-------GAA--AACA--CCACTTCCTG 20871 Query 365 T-TACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | || ||||||| |||||| || |||||||||| |||| ||||| Sbjct 20872 TCTA-------ACTTGCAGGTGTTAAGCATGCCGCCAGCATTCATCCTGAG 20915 >seq98 Length=870214 Score = 149 bits (164), Expect = 2e-33 Identities = 273/397 (69%), Gaps = 31/397 (8%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| || ||||| | | | ||||||| ||| |||||||| || |||||| || Sbjct 629842 ACCCGTGGGTCTTCTACTTCTATGCGGCATTGCTCTGTCAGGCTTTCGTCCATTGCAGAA 629901 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||| |||||||||| || | || |||||||| |||||||||||| ||||| | |||| Sbjct 629902 AATTCTCCACTGCTGCTTCGCATAAGAGTCTGGGCCGTGTCTCAGTCCCAGTATAGCTGA 629961 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||| ||| |||| || | ||| || |||||| | |||||||| Sbjct 629962 TCATCCTCTCGGACCACCTACTGATCATCATTTTGGTAAGCTATTACCTC-ACAACTAGC 630020 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| || | | | ||| || | || ||| ||| |||| || | Sbjct 630021 TAATCAGATACGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCA 630069 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | || ||||||||| || |||| |||| ||| | ||||||| || || ||| Sbjct 630070 GCC--TACAGGGTATTAGCAACTGTTTTCAGTTGTTGTTCCCCTCCCAAGGGTAGGTTCT 630127 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | ||||||||||| || ||||||| ||| | || ||| ||| | Sbjct 630128 TACGCATTACTCACCTGTTCGCCACT------AGAAATACCA-----CTTTTTGTCA--- 630173 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCA 407 ||||||||||||||| | |||| |||||||||| Sbjct 630174 ---GACTTGCATGTGTTAAGTATGCCACCAGCGTTCA 630207 Score = 87.8 bits (96), Expect = 4e-15 Identities = 115/159 (72%), Gaps = 18/159 (11%) Strand=Plus/Minus Query 256 TATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGAC 315 |||| ||||||||| ||||||| |||| ||| | |||||| ||| || ||| | | Sbjct 629551 TATGGGGTATTAGCAACCGTTTTCAGTTGTTGTTCCCCTCTCAAAGGTAGGTTCTTATGC 629492 Query 316 ATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGA 375 |||||||||||||||||||| ||| || || |||||| || ||| Sbjct 629491 GTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTCCT------GTCCGA 629449 Query 376 CTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | ||||||||||| || |||||||||| |||| ||||| Sbjct 629448 C-TGCATGTGTTAAGCATGCCGCCAGCTTTCATCCTGAG 629411 >seq541 Length=279719 Score = 147 bits (162), Expect = 5e-33 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||| ||| | | ||| Sbjct 238052 TTCACGACCCGTGGGCCTTCTACCTTCACGCGGCATTGCTCCGTCAGACTTTCATCTATT 238111 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | ||| |||| ||| |||| |||| |||||||||| | ||||||||||||||||| Sbjct 238112 GCACAAAATTCTCCATTGCTACCTCTTGTAGGAGTCTAGGTTATGTCTCAGTTCCAGTGT 238171 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| || ||| || | | || ||| || ||||| Sbjct 238172 GGCTGATCATCCTCTCGGACCAGCTACTAATTATCGTCTTGATAAGCTATTGCCTCGCCA 238231 Query 185 ACTAGCTAATC 195 |||| |||||| Sbjct 238232 ACTAACTAATC 238242 >seq9 Length=38056896 Score = 127 bits (140), Expect = 5e-27 Identities = 93/108 (86%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 84 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGA 143 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| || Sbjct 16670480 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTCTCAGTGTGGCTGATCATCCTCTCGGA 16670421 Query 144 CCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCT 191 ||||||| |||| ||| || ||| || ||| || | |||||||||| Sbjct 16670420 CCAGCTATTGATCATCGTCTTGGTAAGCTATTGCCTCACCAACTAGCT 16670373 Score = 118 bits (130), Expect = 3e-24 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77 |||||||| | | || ||||| ||| | |||||||| | |||||| || |||| | Sbjct 17176271 GGCCTTCTACCTCCATATGGCATTGCTCCGTCAGGCTTCCATCCATTGCAAAAAATTCTC 17176330 Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 ||| |||||||| ||||||||||| | ||||| ||||| | |||| || |||| || Sbjct 17176331 TACTAATGCCTCCCATAGGAGTCTGGGTCATGTCTTAGTTCTAATGTGTTTGATCATTCT 17176390 Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 || ||||||||| ||| || ||| ||| || ||| || | |||||||||||||| Sbjct 17176391 CTTGGACCAGCTATTAATCATCACCTTGGTAAGCTATTGCCTCACCAACTAGCTAATC 17176448 >seq46 Length=1555977 Score = 111 bits (122), Expect = 4e-22 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 39 ATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAG 98 || |||| ||| ||||| | |||||||| ||| |||||||||||||||| ||| | |||| Sbjct 381713 ATTGCTGGATCGGGCTTTCACCCATTGTCCAAGATTCCCCACTGCTGCCCCCCATGGGAG 381654 Query 99 TCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 || || |||||||||||| | | |||||||| ||| | ||| |||||| | ||| | Sbjct 381653 TCCGGGCCGTGTCTCAGTCCTAATGTGGCTGATCAATCAAAAAGATCAGCTAAGCATCAT 381594 Query 159 CGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 || ||| ||| ||| | ||||||| ||||| Sbjct 381593 TTGCTTGGTCAGCCTTTATCTGACCAACTACCTAAT 381558 >seq4 Length=57251647 Score = 105 bits (116), Expect = 2e-20 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 83 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 |||||| |||| ||||| ||| | ||||| |||| ||||||||| || ||||||||| | Sbjct 25336358 CTGCCTTCCGTGGGAGTTTGGGCTGTGTCACAGTCCCAGTGTGGTTGATCATCCTCTTGG 25336299 Query 143 ACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||||||| |||| ||| || ||| || ||| || | |||||||||||||| Sbjct 25336298 ACCAGCTATTGATCATCGTCTTGGTAAGCTATTGCCTCACCAACTAGCTAATC 25336246 >seq52 Length=1422267 Score = 104 bits (114), Expect = 6e-20 Identities = 161/228 (71%), Gaps = 13/228 (6%) Strand=Plus/Plus Query 109 GTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTG 168 |||||||| |||||||||||| |||||||||| ||||||||| |||| | |||| ||| Sbjct 476828 GTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATTGCCTTGGTA 476887 Query 169 GGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGA 228 || ||| || | ||||||||||||| | | | | ||| || | || Sbjct 476888 AGCTATTGCCTCATCAACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGACGGA 476939 Query 229 AGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTAT 288 ||| ||| |||| || | | | || | ||||||||| ||| |||||||| ||| | Sbjct 476940 --TTCCTCCT-TTTGCTCCTCAGCC--TACGGGGTATTAGCAACCATTTCCAGTTGTTGT 476994 Query 289 CCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACT 336 | ||||| || || ||| | | |||||||||||||||||||| Sbjct 476995 TCTCCTCCCAAGGGTAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 477042 >seq5 Length=51955539 Score = 98.7 bits (108), Expect = 2e-18 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 34 GCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGT 93 ||||||| ||| ||||| ||| |||| |||| | || |||| ||||| |||| |||||| Sbjct 47242574 GCGGCATTGCTCTATCAGACTTTCGCCTATTGCGGAAAATTCTCCACTACTGCTTCCCGT 47242633 Query 94 AGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATC 135 |||||| || || | ||||||| |||||||||||| ||||| Sbjct 47242634 AGGAGTTTGAGCCATATCTCAGTCCCAGTGTGGCTGATCATC 47242675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221910294336