Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq40061 329 1e-87 seq1093 235 2e-59 seq98 187 7e-45 seq46 187 7e-45 seq541 181 3e-43 seq9 132 1e-28 seq5 127 6e-27 seq4 109 2e-21 seq52 102 2e-19 >seq40061 Length=156973 Score = 329 bits (364), Expect = 1e-87 Identities = 280/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 102568 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 102627 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 102628 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 102687 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 102688 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 102747 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || ||| | ||| ||||| |||||||||| |||||| Sbjct 102748 AGGCCCACGGGTCGTGAACTTCTTTTCTCGGAGAAGAAGCAATGACGGTATCTGAGGAAT 102807 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 102808 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 102867 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || | ||||| Sbjct 102868 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 102909 Score = 329 bits (364), Expect = 1e-87 Identities = 280/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 139598 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 139539 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 139538 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 139479 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 139478 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 139419 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || ||| | ||| ||||| |||||||||| |||||| Sbjct 139418 AGGCCCACGGGTCGTGAACTTCTTTTCTCGGAGAAGAAGCAATGACGGTATCTGAGGAAT 139359 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 139358 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 139299 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || | ||||| Sbjct 139298 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 139257 >seq1093 Length=159761 Score = 235 bits (260), Expect = 2e-59 Identities = 257/339 (76%), Gaps = 3/339 (1%) Strand=Plus/Minus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 |||||||||||||||||| ||| || ||||||||||| || |||||||| | | |||| Sbjct 20729 TCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGTGATGATCAGTAACTGGTCTGA 20670 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| ||||| |||||| ||| |||||||||||| ||| |||||||| ||||||| ||| Sbjct 20669 GAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACAAGAGGCAGTAGT 20610 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 || || | || |||||||| ||||| ||| | ||||| || |||| | |||||| Sbjct 20609 GGAGAGTTTTTTGCAATGGGCGAAAGCTTGACGAAGCAATACCACGTGGAGGTAGAAGGC 20550 Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAAGC 401 | |||||||| || | | | |||| ||||| ||||| |||| ||||||| |||| Sbjct 20549 CCACGGGTCGTGAACTTTTTTTCTCAGAGAAGAAGCAATGATGGTATTTGAGGAATAAGC 20490 Query 402 CCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAAT 461 ||||||||| ||| | |||| ||||| || ||| || ||| ||||| ||| Sbjct 20489 ATCGGCTAACTCTATGCTAATAGCCATGGTAAGACAGAGGATGCAAGCATTATCTAGAA- 20431 Query 462 TACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 || | |||||||||| || |||||||| || | ||||| Sbjct 20430 TAATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 20392 >seq98 Length=870214 Score = 187 bits (206), Expect = 7e-45 Identities = 247/339 (73%), Gaps = 4/339 (1%) Strand=Plus/Minus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 |||||||||||||||| | |||||| ||||||||| || ||||||||| | | || Sbjct 630028 TCTGATTAGCTAGTTG-TGAGGTAATAGCTTACCAAAATGATGATCAGTAGGTGGTCCGA 629970 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| ||||| || | | ||| |||||||||||| ||| |||| || | || |||||||| Sbjct 629969 GAGGATGATCAGCTATACTGGGACTGAGACACGGCCCAGACTCTTATGCGAAGCAGCAGT 629910 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 || |||| || |||||| | ||||||||| ||||| ||||| | | |||| | Sbjct 629909 GGAGAATTTTCTGCAATGGACGAAAGCCTGACAGAGCAATGCCGCATAGAAGTAGAAGAC 629850 Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGC 401 | |||||| | || ||| | |||| |||| | | |||||| |||||| || | Sbjct 629849 CCACGGGTCATGAACTTCTTTTCTCAGAGAAGAAACACCGACGGTGTCTGAGGAATAAAC 629790 Query 402 CCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAAT 461 ||||||||| | |||||| |||| |||||| | ||| || ||||||||| ||| Sbjct 629789 ATCGGCTAACTCCATGCCAGTAGCCACGGTAAGATAGAGGATGCAAGCGTTATCTATAAT 629730 Query 462 TACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | | |||| ||||| | |||||||| || | ||||| Sbjct 629729 GA-TTGGGCATAAAGCATCTGTAGGTGGCTTTTCAAGTC 629692 >seq46 Length=1555977 Score = 187 bits (206), Expect = 7e-45 Identities = 242/330 (73%), Gaps = 11/330 (3%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| || ||| |||| |||||| | ||| |||| || || | Sbjct 381558 ATTAGGTAGTTGGTCAGATAAAGGCTGACCAAGCAAATGATGCTTAGCTGATCTTTTTGA 381617 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||||| | |||||||||||| || ||||| | ||| ||||||||||||| Sbjct 381618 TTGATCAGCCACATTAGGACTGAGACACGGCCCGGACTCCCATGGGGGGCAGCAGTGGGG 381677 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| |||||||| |||||| ||| |||||| | | |||| |||||| | | Sbjct 381678 AATCTTGGACAATGGGTGAAAGCCCGATCCAGCAATATCTCATGAG---TGAAGGACTAT 381734 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || | | | ||| |||| | ||||||||| ||||||| Sbjct 381735 GCAGCTTGTAAAGCTCTTTCGTTGAGTGTGCGATCATGATAGGACTTGAGGAAGAAGCCC 381794 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATA---CGTAGGGGGCTAGCGTTATCCGGAA 460 ||||||||| | ||| |||||||||| | | | | |||||| || ||| | ||||| Sbjct 381795 CGGCTAACTCCATGCTAGCAGCCGCGATTAGATCGGGGGGGGGGCAAGTGTTCTTCGGAA 381854 Query 461 TTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 | ||| ||| ||||| || | |||| ||| Sbjct 381855 TGACT-GGGTGTAAAAGGCACATAGGCGGT 381883 >seq541 Length=279719 Score = 181 bits (200), Expect = 3e-43 Identities = 248/343 (72%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 || |||||||||| ||||||| ||| || ||||| |||| ||| || |||||| | Sbjct 238249 CGTGTCTGATTAGTTAGTTGGCGAGGCAATAGCTTATCAAGACGATAATTAGTAGCTGGT 238190 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||||||||||||| | | |||||||| |||| || Sbjct 238189 CCGAGAGGATGATCAGCCACACTGGAACTGAGACATAACCTAGACTCCTACAAGAGGTAG 238130 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 || ||| |||| ||| |||| | |||| |||| | ||||| ||||||||| | || Sbjct 238129 CAATGGAGAATTTTGTGCAATAGATGAAAGTCTGACGGAGCAATGCCGCGTGAAGGTAGA 238070 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCT--CAAGGAAGATAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || | | | | || |||| ||| |||||| ||||| | Sbjct 238069 AGGCCCACGGGTCGTGAACTTTTTTTTTGAAAAAGAAG-CAATAACGGTATTTGAGAAAT 238011 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 ||| ||||||| | ||||||| |||| | ||| || ||| || | ||||||| Sbjct 238010 AAGTATCGGCTAATTTTGTGCCAGTAGCCACAATAAGACAGAGGATGCAAATGTTATCCA 237951 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||| ||||| | |||||||| || | ||||| Sbjct 237950 GAATGA-TTGGGCATAAAGTATCTGTAGGTGGCTTTTCAAGTC 237909 >seq9 Length=38056896 Score = 132 bits (146), Expect = 1e-28 Identities = 236/342 (69%), Gaps = 3/342 (1%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 || |||||||||||||||||| ||| || ||||||||||| || ||| | |||| | | Sbjct 17176454 GCATCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGTGATGATTAATAGCTGGTC 17176395 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 |||| ||||| |||||| ||||| ||||| | ||| ||||||| |||||||| Sbjct 17176394 CAAGAGAATGATCAAACACATTAGAACTAAGACATGACCCAGACTCCTATGGGAGGCATT 17176335 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 ||| | |||| || |||||| |||||||| | ||||| ||| || | ||| Sbjct 17176334 AGTAGAGAATTTTTTGCAATGGATGGAAGCCTGACGGAGCAATGCCATATGGAGGTAGAA 17176275 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGA 398 |||| || |||| || | | | || ||||| |||||| ||| ||||| | | Sbjct 17176274 GGCCCATGGATCGTGAACTTTTTTTCTTGGAGAAGAAGCAATGACAGTATTTGAGAAATA 17176215 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 ||| | |||||| ||| | || | ||||| | | | || || |||||| || Sbjct 17176214 AGCATCAACTAACTCTATGCTTGTAGACATGGTAAGATAGAAGATGCAAGTGTTATCTGG 17176155 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| | | | |||||||| | ||| |||| || | ||||| Sbjct 17176154 AATGA-TTGTGCGTAAAGCATTTGTAAGTGGCTTTTCAAGTC 17176114 Score = 118 bits (130), Expect = 3e-24 Identities = 91/108 (84%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 171 AGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTG 230 ||||||||||| ||| || |||||||||| ||| ||||| |||| | | |||||| || Sbjct 16670373 AGCTAGTTGGTGAGGCAATAGCTTACCAAGACGATGATCAATAGCTGGTCCGAGAGGATG 16670432 Query 231 ATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCA 278 ||| |||||| || |||||||||||||||| |||||||||||||||| Sbjct 16670433 ATCAGCCACACTGAGACTGAGACACGGTCCAGACTCCTACGGGAGGCA 16670480 >seq5 Length=51955539 Score = 127 bits (140), Expect = 6e-27 Identities = 156/211 (74%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 229 TGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGA 288 ||||| |||||| ||| ||||||| | || ||||||||||||||| |||| ||||| || Sbjct 47242673 TGATCAGCCACACTGGGACTGAGATATGGCTCAAACTCCTACGGGAAGCAGTAGTGGAGA 47242614 Query 289 ATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGT-GAGCGATGAAGGCCTTC 347 || || | |||| ||| |||| ||||| ||||| ||||| | ||| | || ||| Sbjct 47242613 ATTTTCCGCAATAGGCGAAAGTCTGATAGAGCAATGCCGCATAGAGATAGAAAAGCCCAT 47242554 Query 348 GGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAAGCCCCG 405 ||||||| || ||| | |||| ||||| |||||| ||| ||| || |||| | Sbjct 47242553 GGGTCGTGAACTTCTTTTCTCAGAGAAGAAGTAATGATAGTATCTGAAGAATAAGCATCA 47242494 Query 406 GCTAACTACGTGCCAGCAGCCGCGGTAATAC 436 ||||||| ||| ||||||||| ||| || Sbjct 47242493 GCTAACTCTGTGTACGCAGCCGCGATAAGAC 47242463 Score = 120 bits (132), Expect = 9e-25 Identities = 157/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC 347 ||| || | |||||| | ||||||||||| ||||| |||| || | ||| ||| | Sbjct 9510575 AATTTTTCGCAATGGACGAAAGCCTGATGGAGCAATACCGCATGGAGGTAGAAAGCCCAC 9510516 Query 348 GGGTCGTAAAGCTCTGTCCTCAAGGAAGAT--AATGACGGTACTTGAGGAGGAAGCCCCG 405 ||||||| || ||| | ||| ||||| |||||||||| |||| | ||| || Sbjct 9510515 GGGTCGTGAACTTCTTTTCTCGGAGAAGAAGCAATGACGGTATCTGAGAAATAAGTATCG 9510456 Query 406 GCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACT 465 ||||| | ||||||||||||| |||| || | | || ||||||||||| ||| | | Sbjct 9510455 GCTAATTCTGTGCCAGCAGCCGTAGTAAGACAGAAGATGCAAGCGTTATCCGAAATGA-T 9510397 Query 466 GGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||||| || ||||||| || ||||||| Sbjct 9510396 TGGGCGTAAAGCGTCTGTAGGTGACTTTTTAAGTC 9510362 >seq4 Length=57251647 Score = 109 bits (120), Expect = 2e-21 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 165 CTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAG 224 ||||||||||||||||| ||| || |||||||||| ||| ||||| |||| | | || Sbjct 25336244 CTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGACGATGATCAATAGCTGGTCCAAG 25336303 Query 225 AGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 ||| ||||| ||||| ||| |||| ||||| | ||||||||| |||| |||||| Sbjct 25336304 AGGATGATCAACCACACTGGGACTGTGACACAGCCCAAACTCCCACGGAAGGCAG 25336358 >seq52 Length=1422267 Score = 102 bits (112), Expect = 2e-19 Identities = 79/94 (84%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||| | ||| || |||||||||||| | |||||||||| | Sbjct 476921 CGCGTCTGATTAGCTAGTTGATGAGGCAATAGCTTACCAAGGCAATGATCAGTAGCTGGT 476862 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGAC 253 | |||||| ||||| |||||| ||| |||||||| Sbjct 476861 CCGAGAGGATGATCAGCCACACTGGGACTGAGAC 476828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497000046464