Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13]
40,061 sequences; 1,535,178,229 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq40061 277 4e-72
seq1093 181 3e-43
seq5 179 9e-43
seq46 125 2e-26
seq9 114 3e-23
seq8700 104 6e-20
seq1 95.1 3e-17
>seq40061
Length=156973
Score = 277 bits (306), Expect = 4e-72
Identities = 306/405 (76%), Gaps = 2/405 (0%)
Strand=Plus/Plus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|||||| |||| ||||||||| ||||||||||||||||||| || ||| || |||
Sbjct 102800 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 102859
Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124
|||||||||||| | ||||||||||| || |||||||| || | ||||| | || |||
Sbjct 102860 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 102919
Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184
| | |||||||||| || || | |||||| | ||| |||| | | |||||||
Sbjct 102920 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 102979
Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244
|||||| | ||| |||||||||||||||||| || | | |||||||| ||||||
Sbjct 102980 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 103039
Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304
|| |||||| | | |||||||||||| ||||||| |||||||||| |||||
Sbjct 103040 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 103099
Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363
|||||||| ||||||| ||||||||||||| |||||||| | | | ||| || |
Sbjct 103100 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 103158
Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
| | |||| | ||| ||||| ||||||| || |||||||||||
Sbjct 103159 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 103203
Score = 277 bits (306), Expect = 4e-72
Identities = 306/405 (76%), Gaps = 2/405 (0%)
Strand=Plus/Minus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|||||| |||| ||||||||| ||||||||||||||||||| || ||| || |||
Sbjct 139366 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 139307
Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124
|||||||||||| | ||||||||||| || |||||||| || | ||||| | || |||
Sbjct 139306 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 139247
Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184
| | |||||||||| || || | |||||| | ||| |||| | | |||||||
Sbjct 139246 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 139187
Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244
|||||| | ||| |||||||||||||||||| || | | |||||||| ||||||
Sbjct 139186 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 139127
Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304
|| |||||| | | |||||||||||| ||||||| |||||||||| |||||
Sbjct 139126 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 139067
Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363
|||||||| ||||||| ||||||||||||| |||||||| | | | ||| || |
Sbjct 139066 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 139008
Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
| | |||| | ||| ||||| ||||||| || |||||||||||
Sbjct 139007 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 138963
>seq1093
Length=159761
Score = 181 bits (200), Expect = 3e-43
Identities = 288/409 (70%), Gaps = 3/409 (1%)
Strand=Plus/Minus
Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60
|| ||||||| |||| ||||||||| ||| | |||| ||||| || ||| ||
Sbjct 20505 TATTTGAGGAATAAGCATCGGCTAACTCTATGCTAATAGCCATGGTAAGACAGAGGATGC 20446
Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120
||| ||||| |||| | ||||||||||| || |||||||| || | ||||| | |
Sbjct 20445 AAGCATTATCTAGAATAATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCTGCCAT 20386
Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180
||| | | |||||||||| || || | |||||| | ||| |||| | | |||
Sbjct 20385 CAAATCC-AGGGCTCAACCCTGGACAGGCGATGGAAACTACCAAGCTGGAGTACGGTAGG 20327
Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240
|||| |||| | ||| ||| ||| |||||||||| ||| | ||| |||| ||
Sbjct 20326 GGCAGAGAAAATTTTTGGTGGAGCAGTGGAATGCGTAGAGATTGAAAAGAATACCAACGG 20267
Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300
||| || | |||| | | ||||| |||||| ||||||| |||||||||| |
Sbjct 20266 TGAAAGCACTCTACTGGGCCGACACTGATACTGAGAGACGAAAGCTAGGGGAGCAAATGG 20207
Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-A 359
|||||||||||| ||||||| | ||||||||||| |||||||||| | | ||| ||
Sbjct 20206 GATTAGATACCCCAGTAGTCCTAGTCGTAAACGATGGATACTAGGTG-CTGTGCGTATCG 20148
Query 360 AGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
| | | ||| | ||| || ||| ||||||| | | |||||||||
Sbjct 20147 ACCCATGCAATGCTGTAGCTAATGCATTAAGTATCCTGCTTGGGGAGTA 20099
>seq5
Length=51955539
Score = 179 bits (198), Expect = 9e-43
Identities = 278/395 (70%), Gaps = 23/395 (6%)
Strand=Plus/Minus
Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78
||||||| | ||||||||||||| |||| || | | || ||||||||||| ||| |
Sbjct 9510457 CGGCTAATTCTGTGCCAGCAGCCGTAGTAAGACAGAAGATGCAAGCGTTATCCGAAATGA 9510398
Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138
||||||||||| || ||||||| || ||||||| | || ||| |||
Sbjct 9510397 TTGGGCGTAAAGCGTCTGTAGGTGACTTTTTAAGTCCGCCGTCAAATCCTA--------- 9510347
Query 139 CCCGGGACTGCTTTTG-AAACTGCAGGGCTAGAGTGCAGGAGGGGCA-AGTGGAATTCCT 196
||| | | || ||||| | ||| |||| || ||||||| || | | || |
Sbjct 9510346 -----GACAGGTGGTGGAAACTACCAAGCTGGAGTAAAGTAGGGGCAGAGAGAATTTTCG 9510292
Query 197 AGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTG 256
| || |||| |||||| |||||| || | | |||||||| |||||| || |||||
Sbjct 9510291 A-TGGAGCGATGAAATACGTAGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTG 9510233
Query 257 GACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGT 316
|| | |||||||| ||| ||||||| |||||||||| |||||||||||||| ||
Sbjct 9510232 GATCGACACTGACACGGAGAGACGAAAGCTAGGGGAGCAAATAGGATTAGATACCCCAGT 9510173
Query 317 AGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATA---AGTGCTCCGGTGCC 373
|||| ||||||||||||| |||||| | || | ||||| | | | ||||
Sbjct 9510172 AGTCATAGCCGTAAACGATGGATACTAAG---CGCTGTGCATATCGACCCGTGCAGTGCT 9510116
Query 374 GCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
| ||| ||||| ||||||| ||| ||||| ||||
Sbjct 9510115 GTAGCTAACGCGTTAAGTATCCCATCTGGGAAGTA 9510081
Score = 105 bits (116), Expect = 2e-20
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244
|||||| || | |||||| |||||||| |||||||| | |||||| ||| || ||
Sbjct 1530661 AGTGGAGTTTCGTGTGTAGGGGTGAAATCTGTAGATATACGAAGGAACGCCAAAAGCAAA 1530602
Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304
||| ||| |||| || || ||| || | ||||| |||||||| || ||||||
Sbjct 1530601 GGCAGCTCTCTGGGTCCCTACCGATGCTGTGGTGCAAAAGCATGGGGAGCGAATAGGATT 1530542
Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGA 337
||||||| || ||||||| ||| ||||||||||
Sbjct 1530541 AGATACCTTGATAGTCCATGCCATAAACGATGA 1530509
>seq46
Length=1555977
Score = 125 bits (138), Expect = 2e-26
Identities = 236/340 (69%), Gaps = 9/340 (3%)
Strand=Plus/Plus
Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATA---CGTAGGGG 58
||||||||| |||||||||||||||| | ||| |||||||||| | | | | ||||
Sbjct 381778 ACTTGAGGAAGAAGCCCCGGCTAACTCCATGCTAGCAGCCGCGATTAGATCGGGGGGGGG 381837
Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAG 118
|| || ||| | |||||| |||||| ||||| || | |||| ||| || || |
Sbjct 381838 GCAAGTGTTCTTCGGAATGACTGGGTGTAAAAGGCACATAGGCGGTGAATTGGGTTGAAA 381897
Query 119 GTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGA 178
||||| | | || | ||| ||| |||| | |||||| || ||||| ||
Sbjct 381898 GTGAATGTC-ATCAAT-AACTAACGGAGTGCTCTCGAAACTAATTCACTTGAGTG-AGAT 381954
Query 179 GG-GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237
|| || |||| |||| |||||| ||| |||| | ||||| | |||||| |||
Sbjct 381955 GGAGGAGAGTGAAATT--GTGTGTAGGGGTAAAATCCATAGATCTACAAAGGAACGCCAA 382012
Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297
| ||||| ||| |||| || || || || ||||||| ||||||| ||
Sbjct 382013 AAGTGAAGGGAGCTCTCTGGGTCCCTACAGATGCTTGGGTGCGAAAGCATGGGGAGTGAA 382072
Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337
|||||||||||||||| ||| |||| | |||||| |||||
Sbjct 382073 CAGGATTAGATACCCTAGTAATCCATGTCGTAAATGATGA 382112
>seq9
Length=38056896
Score = 114 bits (126), Expect = 3e-23
Identities = 257/380 (68%), Gaps = 16/380 (4%)
Strand=Plus/Plus
Query 40 CCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAG 99
||||| ||| || ||| | | ||| ||||||| ||| | ||| ||||||| || ||||
Sbjct 16676988 CCGCGCTAAGACAGAGGTG-CAAGCATTATCCGAAATGATTGGACGTAAAGTGTCTGTAG 16677046
Query 100 GTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAA-C 158
|||| || | ||||| | || ||| | ||||||||| | || | ||||| |
Sbjct 16677047 GTGGCTTTTCAAGTCCGCCGTCAAATCTCAAGGCTCAACCTTGA-ACAGACAGTGAAAAC 16677105
Query 159 TGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAG 218
| | |||||||| | ||||||| |||| | || ||| ||||||| |||||
Sbjct 16677106 TACCAAGCTAGAGTATGGTAGGGGCAGAGAAAATTTTCAATGGAGCAGTGAAATACGTAG 16677165
Query 219 ATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCT 278
| || | |||||||| |||| || || |||| | | ||| ||||||||
Sbjct 16677166 AGATCGAAAAGAACACCAATGGCTAAAGCACTCTGCTAGGCCAACACTAACACTGAGAGA 16677225
Query 279 CGAAAGC-----GT--GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAA 331
|||||| || || ||| ||| ||||||||||||| ||||||| ||| ||||
Sbjct 16677226 CGAAAGTTAAAAGTTAGGAGAGTAAATGGGATTAGATACCCCAGTAGTCCTAGCCATAAA 16677285
Query 332 CGATGAATACTAGGTGTCGGGGCGCATA---AGTGCTCCGGTGCCGCAGCAAACGCAATA 388
|||| |||||||| | | ||||| | | | |||| ||| |||||| ||
Sbjct 16677286 TGATGGATACTAGG---CACTGTGCATATCGACCCATGCAGTGCTATAGCTAACGCATTA 16677342
Query 389 AGTATTCCACCTGGGGAGTA 408
||||| |||||||| ||||
Sbjct 16677343 AGTATCCCACCTGGAAAGTA 16677362
Score = 93.3 bits (102), Expect = 1e-16
Identities = 198/289 (69%), Gaps = 5/289 (2%)
Strand=Plus/Minus
Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAG 118
|| || |||||| ||||| | || |||||||| | ||| |||| || | |||||
Sbjct 17176169 GCAAGTGTTATCTGGAATGATTGTGCGTAAAGCATTTGTAAGTGGCTTTTCAAGTCCACC 17176110
Query 119 GTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTG-AAACTGCAGGGCTAGAGTGCAGG 177
|| ||| | | |||||||| | | || | | || ||||| | |||||||| |
Sbjct 17176109 GTCAAATCCCAAGGCTCAACACTAG-ACAGATGATGGAAACTACCAAGCTAGAGTATGGT 17176051
Query 178 AGGGGCA-AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCA 236
||||||| | |||| | ||| ||||||||||||| |||| ||| | | |||||||
Sbjct 17176050 AGGGGCACAAAAAAATTTCG-GTGGAGCGGTGAAATGCATAGAGATTGGAAAAAACACCA 17175992
Query 237 GTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296
| || | ||||||| | ||||| | |||| |||||| ||||||||
Sbjct 17175991 ACAACAAAAGTACTATGCTGGATCGACACTGA-ATTGAGAAATGAAAGCTAAGGGAGCAA 17175933
Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345
| |||||| |||||| |||||| || ||||| |||| ||| ||||
Sbjct 17175932 ATGGGATTAAATACCCCAATAGTCCTAGCTGTAAATGATGGATATTAGG 17175884
>seq8700
Length=4612
Score = 104 bits (114), Expect = 6e-20
Identities = 133/181 (73%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 165 GCTAGAGTGCAGGAGGGGCA-AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATT 223
||| |||| | | ||||||| || | | || | | || |||| |||||| |||||| ||
Sbjct 276 GCTGGAGTACGGTAGGGGCAGAGAGAATTTTCGA-TGGAGCGATGAAATACGTAGAGATC 218
Query 224 AGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAA 283
| ||||| || || ||| || |||||| | | |||||||||||| |||||
Sbjct 217 GAAAAGAACATCAACGGTGAAAGCACTATGCTGGGCCGACACTGACACTGAGAGACGAAA 158
Query 284 GCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343
| ||| |||||| | |||| ||||||| ||||||| ||||||||||||| ||||||
Sbjct 157 GTTAGGGAAGCAAATGGAATTAAATACCCTAGTAGTCCTAGCCGTAAACGATGGATACTA 98
Query 344 G 344
|
Sbjct 97 G 97
>seq1
Length=68435666
Score = 95.1 bits (104), Expect = 3e-17
Identities = 72/85 (85%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 262 TAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 321
|| ||||||||||| ||||||| |||||||||| ||||||||||||| |||||||
Sbjct 68105397 TAGCTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGATACCCCAGTAGTCC 68105338
Query 322 ACGCCGTAAACGATGAATACTAGGT 346
||||||||||||| |||||||||
Sbjct 68105337 TAGCCGTAAACGATGGATACTAGGT 68105313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1202717986048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |