Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq40061 277 4e-72 seq1093 181 3e-43 seq5 179 9e-43 seq46 125 2e-26 seq9 114 3e-23 seq8700 104 6e-20 seq1 95.1 3e-17 >seq40061 Length=156973 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 102800 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 102859 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 102860 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 102919 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 102920 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 102979 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 102980 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 103039 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||||| ||||| Sbjct 103040 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 103099 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 103100 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 103158 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 103159 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 103203 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 139366 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 139307 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 139306 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 139247 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 139246 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 139187 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 139186 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 139127 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||||| ||||| Sbjct 139126 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 139067 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 139066 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 139008 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 139007 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 138963 >seq1093 Length=159761 Score = 181 bits (200), Expect = 3e-43 Identities = 288/409 (70%), Gaps = 3/409 (1%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 || ||||||| |||| ||||||||| ||| | |||| ||||| || ||| || Sbjct 20505 TATTTGAGGAATAAGCATCGGCTAACTCTATGCTAATAGCCATGGTAAGACAGAGGATGC 20446 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 ||| ||||| |||| | ||||||||||| || |||||||| || | ||||| | | Sbjct 20445 AAGCATTATCTAGAATAATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCTGCCAT 20386 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 ||| | | |||||||||| || || | |||||| | ||| |||| | | ||| Sbjct 20385 CAAATCC-AGGGCTCAACCCTGGACAGGCGATGGAAACTACCAAGCTGGAGTACGGTAGG 20327 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 |||| |||| | ||| ||| ||| |||||||||| ||| | ||| |||| || Sbjct 20326 GGCAGAGAAAATTTTTGGTGGAGCAGTGGAATGCGTAGAGATTGAAAAGAATACCAACGG 20267 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 ||| || | |||| | | ||||| |||||| ||||||| |||||||||| | Sbjct 20266 TGAAAGCACTCTACTGGGCCGACACTGATACTGAGAGACGAAAGCTAGGGGAGCAAATGG 20207 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-A 359 |||||||||||| ||||||| | ||||||||||| |||||||||| | | ||| || Sbjct 20206 GATTAGATACCCCAGTAGTCCTAGTCGTAAACGATGGATACTAGGTG-CTGTGCGTATCG 20148 Query 360 AGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | | ||| | ||| || ||| ||||||| | | ||||||||| Sbjct 20147 ACCCATGCAATGCTGTAGCTAATGCATTAAGTATCCTGCTTGGGGAGTA 20099 >seq5 Length=51955539 Score = 179 bits (198), Expect = 9e-43 Identities = 278/395 (70%), Gaps = 23/395 (6%) Strand=Plus/Minus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||| | ||||||||||||| |||| || | | || ||||||||||| ||| | Sbjct 9510457 CGGCTAATTCTGTGCCAGCAGCCGTAGTAAGACAGAAGATGCAAGCGTTATCCGAAATGA 9510398 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 ||||||||||| || ||||||| || ||||||| | || ||| ||| Sbjct 9510397 TTGGGCGTAAAGCGTCTGTAGGTGACTTTTTAAGTCCGCCGTCAAATCCTA--------- 9510347 Query 139 CCCGGGACTGCTTTTG-AAACTGCAGGGCTAGAGTGCAGGAGGGGCA-AGTGGAATTCCT 196 ||| | | || ||||| | ||| |||| || ||||||| || | | || | Sbjct 9510346 -----GACAGGTGGTGGAAACTACCAAGCTGGAGTAAAGTAGGGGCAGAGAGAATTTTCG 9510292 Query 197 AGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTG 256 | || |||| |||||| |||||| || | | |||||||| |||||| || ||||| Sbjct 9510291 A-TGGAGCGATGAAATACGTAGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTG 9510233 Query 257 GACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGT 316 || | |||||||| ||| ||||||| |||||||||| |||||||||||||| || Sbjct 9510232 GATCGACACTGACACGGAGAGACGAAAGCTAGGGGAGCAAATAGGATTAGATACCCCAGT 9510173 Query 317 AGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATA---AGTGCTCCGGTGCC 373 |||| ||||||||||||| |||||| | || | ||||| | | | |||| Sbjct 9510172 AGTCATAGCCGTAAACGATGGATACTAAG---CGCTGTGCATATCGACCCGTGCAGTGCT 9510116 Query 374 GCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | ||| ||||| ||||||| ||| ||||| |||| Sbjct 9510115 GTAGCTAACGCGTTAAGTATCCCATCTGGGAAGTA 9510081 Score = 105 bits (116), Expect = 2e-20 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| || | |||||| |||||||| |||||||| | |||||| ||| || || Sbjct 1530661 AGTGGAGTTTCGTGTGTAGGGGTGAAATCTGTAGATATACGAAGGAACGCCAAAAGCAAA 1530602 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 ||| ||| |||| || || ||| || | ||||| |||||||| || |||||| Sbjct 1530601 GGCAGCTCTCTGGGTCCCTACCGATGCTGTGGTGCAAAAGCATGGGGAGCGAATAGGATT 1530542 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||| || ||||||| ||| |||||||||| Sbjct 1530541 AGATACCTTGATAGTCCATGCCATAAACGATGA 1530509 >seq46 Length=1555977 Score = 125 bits (138), Expect = 2e-26 Identities = 236/340 (69%), Gaps = 9/340 (3%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATA---CGTAGGGG 58 ||||||||| |||||||||||||||| | ||| |||||||||| | | | | |||| Sbjct 381778 ACTTGAGGAAGAAGCCCCGGCTAACTCCATGCTAGCAGCCGCGATTAGATCGGGGGGGGG 381837 Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAG 118 || || ||| | |||||| |||||| ||||| || | |||| ||| || || | Sbjct 381838 GCAAGTGTTCTTCGGAATGACTGGGTGTAAAAGGCACATAGGCGGTGAATTGGGTTGAAA 381897 Query 119 GTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGA 178 ||||| | | || | ||| ||| |||| | |||||| || ||||| || Sbjct 381898 GTGAATGTC-ATCAAT-AACTAACGGAGTGCTCTCGAAACTAATTCACTTGAGTG-AGAT 381954 Query 179 GG-GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || |||| |||| |||||| ||| |||| | ||||| | |||||| ||| Sbjct 381955 GGAGGAGAGTGAAATT--GTGTGTAGGGGTAAAATCCATAGATCTACAAAGGAACGCCAA 382012 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 | ||||| ||| |||| || || || || ||||||| ||||||| || Sbjct 382013 AAGTGAAGGGAGCTCTCTGGGTCCCTACAGATGCTTGGGTGCGAAAGCATGGGGAGTGAA 382072 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||||||||||| ||| |||| | |||||| ||||| Sbjct 382073 CAGGATTAGATACCCTAGTAATCCATGTCGTAAATGATGA 382112 >seq9 Length=38056896 Score = 114 bits (126), Expect = 3e-23 Identities = 257/380 (68%), Gaps = 16/380 (4%) Strand=Plus/Plus Query 40 CCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAG 99 ||||| ||| || ||| | | ||| ||||||| ||| | ||| ||||||| || |||| Sbjct 16676988 CCGCGCTAAGACAGAGGTG-CAAGCATTATCCGAAATGATTGGACGTAAAGTGTCTGTAG 16677046 Query 100 GTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAA-C 158 |||| || | ||||| | || ||| | ||||||||| | || | ||||| | Sbjct 16677047 GTGGCTTTTCAAGTCCGCCGTCAAATCTCAAGGCTCAACCTTGA-ACAGACAGTGAAAAC 16677105 Query 159 TGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAG 218 | | |||||||| | ||||||| |||| | || ||| ||||||| ||||| Sbjct 16677106 TACCAAGCTAGAGTATGGTAGGGGCAGAGAAAATTTTCAATGGAGCAGTGAAATACGTAG 16677165 Query 219 ATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCT 278 | || | |||||||| |||| || || |||| | | ||| |||||||| Sbjct 16677166 AGATCGAAAAGAACACCAATGGCTAAAGCACTCTGCTAGGCCAACACTAACACTGAGAGA 16677225 Query 279 CGAAAGC-----GT--GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAA 331 |||||| || || ||| ||| ||||||||||||| ||||||| ||| |||| Sbjct 16677226 CGAAAGTTAAAAGTTAGGAGAGTAAATGGGATTAGATACCCCAGTAGTCCTAGCCATAAA 16677285 Query 332 CGATGAATACTAGGTGTCGGGGCGCATA---AGTGCTCCGGTGCCGCAGCAAACGCAATA 388 |||| |||||||| | | ||||| | | | |||| ||| |||||| || Sbjct 16677286 TGATGGATACTAGG---CACTGTGCATATCGACCCATGCAGTGCTATAGCTAACGCATTA 16677342 Query 389 AGTATTCCACCTGGGGAGTA 408 ||||| |||||||| |||| Sbjct 16677343 AGTATCCCACCTGGAAAGTA 16677362 Score = 93.3 bits (102), Expect = 1e-16 Identities = 198/289 (69%), Gaps = 5/289 (2%) Strand=Plus/Minus Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAG 118 || || |||||| ||||| | || |||||||| | ||| |||| || | ||||| Sbjct 17176169 GCAAGTGTTATCTGGAATGATTGTGCGTAAAGCATTTGTAAGTGGCTTTTCAAGTCCACC 17176110 Query 119 GTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTG-AAACTGCAGGGCTAGAGTGCAGG 177 || ||| | | |||||||| | | || | | || ||||| | |||||||| | Sbjct 17176109 GTCAAATCCCAAGGCTCAACACTAG-ACAGATGATGGAAACTACCAAGCTAGAGTATGGT 17176051 Query 178 AGGGGCA-AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCA 236 ||||||| | |||| | ||| ||||||||||||| |||| ||| | | ||||||| Sbjct 17176050 AGGGGCACAAAAAAATTTCG-GTGGAGCGGTGAAATGCATAGAGATTGGAAAAAACACCA 17175992 Query 237 GTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296 | || | ||||||| | ||||| | |||| |||||| |||||||| Sbjct 17175991 ACAACAAAAGTACTATGCTGGATCGACACTGA-ATTGAGAAATGAAAGCTAAGGGAGCAA 17175933 Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 | |||||| |||||| |||||| || ||||| |||| ||| |||| Sbjct 17175932 ATGGGATTAAATACCCCAATAGTCCTAGCTGTAAATGATGGATATTAGG 17175884 >seq8700 Length=4612 Score = 104 bits (114), Expect = 6e-20 Identities = 133/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 165 GCTAGAGTGCAGGAGGGGCA-AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATT 223 ||| |||| | | ||||||| || | | || | | || |||| |||||| |||||| || Sbjct 276 GCTGGAGTACGGTAGGGGCAGAGAGAATTTTCGA-TGGAGCGATGAAATACGTAGAGATC 218 Query 224 AGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAA 283 | ||||| || || ||| || |||||| | | |||||||||||| ||||| Sbjct 217 GAAAAGAACATCAACGGTGAAAGCACTATGCTGGGCCGACACTGACACTGAGAGACGAAA 158 Query 284 GCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 | ||| |||||| | |||| ||||||| ||||||| ||||||||||||| |||||| Sbjct 157 GTTAGGGAAGCAAATGGAATTAAATACCCTAGTAGTCCTAGCCGTAAACGATGGATACTA 98 Query 344 G 344 | Sbjct 97 G 97 >seq1 Length=68435666 Score = 95.1 bits (104), Expect = 3e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 262 TAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 321 || ||||||||||| ||||||| |||||||||| ||||||||||||| ||||||| Sbjct 68105397 TAGCTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGATACCCCAGTAGTCC 68105338 Query 322 ACGCCGTAAACGATGAATACTAGGT 346 ||||||||||||| ||||||||| Sbjct 68105337 TAGCCGTAAACGATGGATACTAGGT 68105313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202717986048