Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq40061 188 2e-45 seq8 132 2e-28 seq15 102 3e-19 seq2 102 3e-19 seq11 100 1e-18 seq6 100 1e-18 seq5 77.0 1e-11 >seq40061 Length=156973 Score = 188 bits (208), Expect = 2e-45 Identities = 397/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| ||| | | |||||||| | |||||||| ||||| Sbjct 106913 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 106972 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 106973 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 107032 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 107033 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 107092 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 107093 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 107147 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 107148 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 107205 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | || | || | || |||||| ||||| | |||| | | | | Sbjct 107206 CCCCAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTC 107265 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 107266 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 107323 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 107324 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 107382 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 107383 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 107441 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||||||| ||||||| | | ||| |||||||||||||| Sbjct 107442 CTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 107483 Score = 188 bits (208), Expect = 2e-45 Identities = 397/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| ||| | | |||||||| | |||||||| ||||| Sbjct 135253 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 135194 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 135193 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 135134 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 135133 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 135074 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 135073 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 135019 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 135018 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 134961 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | || | || | || |||||| ||||| | |||| | | | | Sbjct 134960 CCCCAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTC 134901 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 134900 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 134843 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 134842 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 134784 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 134783 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 134725 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||||||| ||||||| | | ||| |||||||||||||| Sbjct 134724 CTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 134683 >seq8 Length=40195399 Score = 132 bits (146), Expect = 2e-28 Identities = 315/471 (67%), Gaps = 35/471 (7%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| |||||||| ||||| ||||||||||| | ||| | || ||||| Sbjct 29095105 GACCCGAACTTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAG 29095164 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 |||| |||| ||| |||||||| ||| || ||||||| ||||| ||||||| ||| || | Sbjct 29095165 GTCCAAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTAAAATGCCA 29095224 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTA--T 212 |||| || |||||| ||||| |||||| || || | || || || | Sbjct 29095225 CTAAAACCCAGAGCTAGCTGATTCTCCCCGAAATGCGTTGAG---GCGCAGCAGTTAACT 29095281 Query 213 CACCATC-GGGGGTAGAGCACTGTT---ATGGCTAGGGGGTCATTGCGACTTACCAAACC 268 | |||| |||||| ||||||||| ||| | | | | ||| ||||||| Sbjct 29095282 GAACATCTAGGGGTAAAGCACTGTTTCGATGCGAACCGCG--AGAGCG--GTACCAAATT 29095337 Query 269 ATTGCAAACTCCGAATGC--------GCATCAGTTTTACCGCGG-----------GAGTG 309 |||||||| ||| | | || | || | || |||| Sbjct 29095338 GAGGCAAACTCTAAATACTAGATATGACCCCAAAATAACAGGGGTCAAGGTCGGCCAGTG 29095397 Query 310 AGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGC 369 || ||||| | |||| | | | ||||||| || | || ||| | |||||||||| Sbjct 29095398 AGACGATGGGAGATAAGCTTCATCGTCGAGAGGGAAACAGTCTGGATCACCAGCTAAGGC 29095457 Query 370 CCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTG 429 ||| ||||||| ||| | | | | || || || | ||| ||||||| |||| ||| Sbjct 29095458 CCCTAAATGACCGCTCAATGATA--AAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTT 29095515 Query 430 GCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 || | |||||||||| || || ||||||||||||| |||||||| ||||| Sbjct 29095516 GCCTAGAAGCAGCCACTC-TTGAAAGAGTGCGTAATAGCTCACTGATCGAG 29095565 >seq15 Length=24314465 Score = 102 bits (112), Expect = 3e-19 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 47 AGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCAC 106 ||||||||| || || ||| |||||| | | | | || |||||||||||||| || Sbjct 21947242 AGTGATCTATCCGTGATCAGTATGAAGTTTGGATGAAACTAAGTGGAGGTCCGAACCGAC 21947183 Query 107 TAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGA 166 | |||||||| ||| | ||||||| |||| ||||| ||||| || | | ||| | || Sbjct 21947182 TGATGTTGAAGAATCAACGGATGAGTTGTGATTAGGGATGAAATGCCATTCGAACCTAGA 21947123 Query 167 AATAGCTGGTTCTCTCCGAAA 187 ||||||||||||||||||| Sbjct 21947122 GCTAGCTGGTTCTCTCCGAAA 21947102 >seq2 Length=65558141 Score = 102 bits (112), Expect = 3e-19 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 ||||| || | | |||||||| ||| | |||||||||| | ||| | || ||||| Sbjct 6513158 GACCCAAACCTAGGTGATCTATCCAAGATCAGGATGAAGCTTGGGTGAAACTAAGTGGAG 6513099 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 ||| ||| | ||| |||||||||||| || |||| | ||||| ||||||||||| || | Sbjct 6513098 GTCTGAATCGACTGATGTTGAAAAATCAGTGGATACGTTGTGGTTAGGGGTGAAATGCCA 6513039 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGT 198 | || || |||||||||||||| |||| | || |||| Sbjct 6513038 CTCGAAACCAGAGCTAGCTGGTTCTCTCTGAAATATGTTGAGGT 6512995 >seq11 Length=30068910 Score = 100 bits (110), Expect = 1e-18 Identities = 162/226 (72%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || |||||||| || |||||||||||| |||| || ||| ||| | || Sbjct 14633174 GAGAGGGAAACAATCCGGATTACTAGCTAAGGCCCCTAAATAACTGCTCAGT--GATGAA 14633231 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||| | |||| || || | ||| ||||||||| || ||||| Sbjct 14633232 GGAGGTAGCAGTGCACAGACAACCAGGAGATTTGCCTAGAACCAGCCATTC-TTGAAAGA 14633290 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTC-GGGCGTGGATAATAATCGGGTATTAAGTTG 515 |||| | | ||||||||| ||||| || | || | | ||| ||| |||| Sbjct 14633291 GTGCATGATAGCTCACTAATCGAGTGCTCTTGTACTGAAGATGAATGGGG--CTAAGCGA 14633348 Query 516 TCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGCAT 560 ||||||||||| ||||||| | | ||| |||||||||| ||||| Sbjct 14633349 TCTACCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGAAGCAT 14633393 >seq6 Length=44357769 Score = 100 bits (110), Expect = 1e-18 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 48 GTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACT 107 |||||||| ||||| |||||||||| | ||| | || |||||||||||||| ||| Sbjct 37292700 GTGATCTATCCATGATCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACT 37292759 Query 108 AATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAA 155 |||||||| ||| || ||||||| ||||| ||||||||||| || || Sbjct 37292760 GATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCAA 37292807 >seq5 Length=51955539 Score = 77.0 bits (84), Expect = 1e-11 Identities = 122/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 13 AGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAA 72 |||| || ||| ||| | | ||| |||| | |||||||| | ||| || |||||| Sbjct 10406246 AGGGTGATTGTCACTGCTTATGGACTCGAATCTGGGTGATCTATCTATGATCAAGATGAA 10406305 Query 73 GGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGC 132 | | ||| | || |||||||||||| | ||| |||||||| || || |||||| Sbjct 10406306 GCTTGGGTGAAACTAAGTGGAGGTCCGAATCGACTGATGTTGAAGGATCAGCAGATGAGT 10406365 Query 133 TGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 || || ||| ||||||| || | | || ||| ||||| ||| || ||||| Sbjct 10406366 TGAGGTTAGAGGTGAAATGCCACTCGAATCCAGAACTAGCTAGTTTTCCTCGAAA 10406420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688923129344