Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq40061 129 1e-27 seq2104 102 1e-19 seq3 84.2 4e-14 >seq40061 Length=156973 Score = 129 bits (142), Expect = 1e-27 Identities = 177/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 106287 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 106346 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 106347 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 106399 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 106400 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 106456 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 106457 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 106516 Query 249 CCT 251 ||| Sbjct 106517 CCT 106519 Score = 129 bits (142), Expect = 1e-27 Identities = 177/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 135879 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 135820 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 135819 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 135767 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 135766 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 135710 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 135709 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 135650 Query 249 CCT 251 ||| Sbjct 135649 CCT 135647 >seq2104 Length=61683 Score = 102 bits (112), Expect = 1e-19 Identities = 93/116 (80%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| || | |||| || ||| ||| ||||||||||||| |||||| | Sbjct 8103 TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCAAACTGAAACATCTTAGTAGCCAGA 8044 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| | |||||| |||||||||||||||||||||| ||||| Sbjct 8043 GGAAAAGAAAGCAAAAGTGATTCCTGTAGTAGTGGCGAGCGAAATGGGAGCAGCCT 7988 >seq3 Length=60060032 Score = 84.2 bits (92), Expect = 4e-14 Identities = 87/113 (77%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 140 TGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGA 198 ||||| |||| ||||||| || ||| || ||| ||||| || | | |||| |||| Sbjct 34991283 TGAATCTATAGATATGCAAGAGACAACCTGGTGAATTGAAATATTTTAATAGCCAGAGGA 34991342 Query 199 AAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 ||||||| ||| | |||||| | ||||||||||||| |||||||| ||||| Sbjct 34991343 AAAGAAAGCAAAAGTGATTCCTATAGTAGTGGCGAGCAAAATGGGAGTAGCCT 34991395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918032079776