Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq40061 188 2e-45 seq15 118 4e-24 seq30752 113 2e-22 seq369 107 7e-21 seq190 102 3e-19 seq16 102 3e-19 seq2 98.7 3e-18 seq3 86.0 2e-14 seq1902 84.2 7e-14 >seq40061 Length=156973 Score = 188 bits (208), Expect = 2e-45 Identities = 391/570 (69%), Gaps = 23/570 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 108650 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 108591 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 108590 GTCCGACCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 108532 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 108531 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 108472 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | | ||||||||||| ||| | | ||| | | || || | |||| | Sbjct 108471 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAG-GAGGCCT--T 108415 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | || ||||||| || | || || || | || |||||| ||| | | ||| Sbjct 108414 CTTTGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTA 108357 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||| | | |||||||| |||| | || | | ||||||| || | | | Sbjct 108356 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 108297 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410 |||||||| |||| | ||||||| | || |||||||||| ||||||| |||||| Sbjct 108296 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 108238 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 108237 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 108178 Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530 |||||||| | ||| ||| || || | | |||| | ||| ||||| Sbjct 108177 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 108124 Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 || |||| ||||||||||||| || |||| Sbjct 108123 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 108094 Score = 188 bits (208), Expect = 2e-45 Identities = 391/570 (69%), Gaps = 23/570 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 133516 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 133575 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 133576 GTCCGACCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 133634 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 133635 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 133694 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | | ||||||||||| ||| | | ||| | | || || | |||| | Sbjct 133695 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAG-GAGGCCT--T 133751 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | || ||||||| || | || || || | || |||||| ||| | | ||| Sbjct 133752 CTTTGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTA 133809 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||| | | |||||||| |||| | || | | ||||||| || | | | Sbjct 133810 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 133869 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410 |||||||| |||| | ||||||| | || |||||||||| ||||||| |||||| Sbjct 133870 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 133928 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 133929 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 133988 Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530 |||||||| | ||| ||| || || | | |||| | ||| ||||| Sbjct 133989 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 134042 Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 || |||| ||||||||||||| || |||| Sbjct 134043 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 134072 >seq15 Length=24314465 Score = 118 bits (130), Expect = 4e-24 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 349 CAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTC 408 |||||||||| || | | | |||||||| ||| |||| || | ||||||||||||||| Sbjct 8530199 CAATTTCACCAGGTCCATATTGGAGACAGCGGGGCAGTCATTCCACCATTCGTGCAGGTC 8530258 Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468 | | ||| |||||| |||||||||||||||| ||| |||| ||||| ||||||||| Sbjct 8530259 GCTAGTTATGCGACAAAGAATTTCGCTACCTTAAGATAGTTAGAGTTATTGCCGCCGTTT 8530318 Query 469 ACTGGGGCTTCAATT 483 | ||||||| ||| Sbjct 8530319 ATCAGGGCTTCCATT 8530333 Score = 98.7 bits (108), Expect = 3e-18 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGG 410 ||||||| | |||| || ||||||| ||||||| ||| || ||| |||||| Sbjct 11356445 ATTTCACTGAGCCTCTGTCCGAGACAGTTTCTAGGTCGTTATGCCTTTTGTGTGGGTCGG 11356386 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 ||||||| ||| || ||||| ||||||||| ||| ||||||||| | ||||||||| | Sbjct 11356385 AACTTACTCGATAAAAAATTTTGCTACCTTAAGATCGTTATAGTTCCAACCGCCGTTCAT 11356326 Query 471 TGGGGCTTC 479 |||||||| Sbjct 11356325 CGGGGCTTC 11356317 >seq30752 Length=2258 Score = 113 bits (124), Expect = 2e-22 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 405 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCC 464 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 786 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCC 727 Query 465 GTTTACTGGGGCTTCAATTACCCGC 489 ||| ||| ||||||| ||| || || Sbjct 726 GTTCACTAGGGCTTCGATTGCCGGC 702 >seq369 Length=445541 Score = 107 bits (118), Expect = 7e-21 Identities = 104/130 (80%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||| | || | | ||||||||| | || |||||||||| ||||||| ||||| Sbjct 264007 ATTTCACTGAGCTTCTCTTTGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCG 263949 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 || ||||| |||||||||||||| ||||||||||| ||||||||||| |||| ||| | Sbjct 263948 GA-CTTACTCGACAAGGAATTTCACTACCTTAGGACCGTTATAGTTACGGCCGCAGTTCA 263890 Query 470 CTGGGGCTTC 479 ||| |||| Sbjct 263889 TCGGGACTTC 263880 >seq190 Length=710995 Score = 102 bits (112), Expect = 3e-19 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 394 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAG 453 || ||||||| ||||||||||||||| ||||||||||||||||| |||||| ||||||| Sbjct 326095 CCTTTCGTGC-GGTCGGAACTTACCCAACAAGGAATTTCGCTACATTAGGACCGTTATAG 326153 Query 454 TTACCACCGCCGTTTACTGGGGCTTC 479 |||| | |||||| || |||||||| Sbjct 326154 TTACGGCTGCCGTTCACCGGGGCTTC 326179 >seq16 Length=21371083 Score = 102 bits (112), Expect = 3e-19 Identities = 79/94 (84%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||| ||| ||||||| ||||| |||||| |||| || |||||||||||||||||| Sbjct 1621411 TCGTTATGCCTTTCGTGCGGGTCGAAACTTATCCGATAAAAAATTTCGCTACCTTAGGAC 1621470 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||| | |||||||| | ||||||||| Sbjct 1621471 CGTTATAGTTGCGGCCGCCGTTCATTGGGGCTTC 1621504 Score = 77.0 bits (84), Expect = 1e-11 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||| | || |||||||||| |||||| |||||||| |||| | ||| |||||| Sbjct 15133715 TCGTTACGTCTTTTGTGCAGGTCGAAACTTATCCGACAAGAAATTCCACTATTTTAGGAC 15133774 Query 446 GGTTATAGTTAC 457 ||||||||||| Sbjct 15133775 CGTTATAGTTAC 15133786 Score = 75.2 bits (82), Expect = 4e-11 Identities = 71/91 (78%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 389 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGT 448 |||| || ||||||| ||| | |||| | || |||||||||| ||| ||||| | || Sbjct 4088294 TTACTCCTTTCGTGCGGGTTGAAACTCATATGATAAGGAATTTCACTATCTTAGAACCGT 4088353 Query 449 TATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||| || |||||| |||| ||||| Sbjct 4088354 TATAGTTACGACTGCCGTTCGCTGGAGCTTC 4088384 >seq2 Length=65558141 Score = 98.7 bits (108), Expect = 3e-18 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||| ||| || || |||||| || |||| |||||||||| |||||||| Sbjct 56701868 TCGTTACGCCTTTCATGCGGGACGAAACTTATCCAACAAAAAATTTCGCTATCTTAGGAT 56701927 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGC 489 ||||||||||| |||||||| | || |||||| || || || Sbjct 56701928 TGTTATAGTTACGGCCGCCGTTCATCGGAGCTTCAGTTGCCGGC 56701971 Score = 98.7 bits (108), Expect = 3e-18 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||| |||||| || |||||| |||| || |||| |||||||||||||| Sbjct 56796221 TCGTTACGCCTTTCATGCAGGACGAAACTTATCCGAAAAAAAATTCCGCTACCTTAGGAT 56796280 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGC 489 ||||||||||| |||| ||| | || |||| | ||||| || Sbjct 56796281 TGTTATAGTTACGGCCGCGGTTCATCGGAGCTTTAGTTACCGGC 56796324 >seq3 Length=60060032 Score = 86.0 bits (94), Expect = 2e-14 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 405 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCC 464 |||| ||| ||| ||||||||||||||||||||||||||| ||||||||||| || | Sbjct 55403413 GGTCAGAATTTATCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGTCGTC 55403354 Query 465 GTTTACTGGGGCTTC 479 ||| ||||||| ||| Sbjct 55403353 GTTCACTGGGGTTTC 55403339 >seq1902 Length=81159 Score = 84.2 bits (92), Expect = 7e-14 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 402 GCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACC 461 ||||||| |||||||| ||||||||||| ||||||| |||| |||||||||| ||| Sbjct 2687 GCAGGTCAAAACTTACCTAACAAGGAATTTTGCTACCTCAGGACCATTATAGTTACGACC 2628 Query 462 GCCGTTTACTGGGGCTTCA 480 |||||| | ||||||| || Sbjct 2627 GCCGTTCATTGGGGCTGCA 2609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701718001536