Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq40061 132 1e-28 seq541 86.0 1e-14 seq98 84.2 5e-14 seq1093 82.4 2e-13 seq46 80.6 6e-13 seq9 73.4 8e-11 >seq40061 Length=156973 Score = 132 bits (146), Expect = 1e-28 Identities = 196/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 102836 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 102788 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 102787 GC------TTCTTCTCCGAGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 102735 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 102734 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 102675 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 102674 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 102615 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 102614 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 102576 Score = 132 bits (146), Expect = 1e-28 Identities = 196/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 139330 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 139378 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 139379 GC------TTCTTCTCCGAGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 139431 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 139432 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 139491 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 139492 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 139551 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 139552 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 139590 >seq541 Length=279719 Score = 86.0 bits (94), Expect = 1e-14 Identities = 139/199 (70%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||| ||||| || | |||| | ||||| ||||||||| | | ||| ||||||| Sbjct 238044 AAAAAAAGTTCACGACCCGTGGG-CCTTCTACCTTCACGCGGCATTGCTCCGTCAGACTT 238102 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 || || |||| ||| |||| || |||| |||| |||||||| | | |||||||| Sbjct 238103 TCATCTATTGCACAAAATTCTCCATTGCTACCTCTTGTAGGAGTCTAGGTTATGTCTCAG 238162 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 ||||| ||||| || | ||||||| || | ||| || | | || | | || || Sbjct 238163 TTCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTAATTATCGTCTTGATAAGCTATT 238222 Query 261 ACCCCGCCTACTACCTAAT 279 || |||| |||| ||||| Sbjct 238223 GCCTCGCCAACTAACTAAT 238241 >seq98 Length=870214 Score = 84.2 bits (92), Expect = 5e-14 Identities = 161/236 (68%), Gaps = 20/236 (8%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||| |||||| |||||||||||||| |||||| | || || ||| Sbjct 629765 GGCTACTGGCATGGAGTTAGCCGATGTTTATTCCTCAGACAC---------------CGT 629809 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTC-ACG 119 | | ||| ||| || | |||||||||| | | |||| | | ||| | |||| | | Sbjct 629810 CGGTG--TTTCTTCTCTGAGAAAAGAAGTTCATGACCCGTGGGTC-TTC-TACTTCTATG 629865 Query 120 CTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTA 179 | | | ||| |||| || |||||||||| || |||| ||||||||| || | || Sbjct 629866 CGGCATTGCTCTGTCAGGCTTTCGTCCATTGCAGAAAATTCTCCACTGCTGCTTCGCATA 629925 Query 180 GGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTA 235 |||| ||| |||||||||||| ||| | | | || | ||||||| || | |||| Sbjct 629926 AGAGTCTGGGCCGTGTCTCAGTCCCAGTATAGCTGATCATCCTCTCGGACCACCTA 629981 >seq1093 Length=159761 Score = 82.4 bits (90), Expect = 2e-13 Identities = 115/160 (72%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 69 TTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGC 128 || ||| || | |||| ||||| || | |||| | ||||| ||| |||| | || Sbjct 20516 TTCTTCTCTGAGAAAAAAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGTGGTATTGC 20574 Query 129 TGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGG 188 | ||| || ||| |||||| || | || |||| ||||||| |||||||| ||| Sbjct 20575 TTCGTCAAGCTTTCGCCCATTGCAAAAAACTCTCCACTACTGCCTCTTGTAGGAGTCTGG 20634 Query 189 ACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 |||||||||||| ||| ||||| || | |||||||||| Sbjct 20635 GCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGA 20674 >seq46 Length=1555977 Score = 80.6 bits (88), Expect = 6e-13 Identities = 124/177 (70%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 ||||| || | || || |||||| |||| ||||| |||||||||| ||| | ||||| Sbjct 381710 GCTGGATCGGGCTTTCACCCATTGTCCAAGATTCCCCACTGCTGCCCCCCATGGGAGTCC 381651 Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGG 246 || |||||||||||| | ||||||| || | | ||| | ||| |||| | | Sbjct 381650 GGGCCGTGTCTCAGTCCTAATGTGGCTGATCAATCAAAAAGATCAGCTAAGCATCATTTG 381591 Query 247 CTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCG 303 || ||| ||| ||| | || |||||||||| ||||| | |||| ||| || Sbjct 381590 CTTGGTCAGCCTTTATCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCG 381534 >seq9 Length=38056896 Score = 73.4 bits (80), Expect = 8e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 169 TGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 |||||||||||||||| |||||||||||||||| || ||||| || | ||||||| || Sbjct 16670480 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTCTCAGTGTGGCTGATCATCCTCTCGGA 16670421 Query 229 ACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCT 276 | |||| ||| | | || ||| || || || | || |||| || Sbjct 16670420 CCAGCTATTGATCATCGTCTTGGTAAGCTATTGCCTCACCAACTAGCT 16670373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068371828032