Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13]
40,061 sequences; 1,535,178,229 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq40061 132 1e-28
seq541 86.0 1e-14
seq98 84.2 5e-14
seq1093 82.4 2e-13
seq46 80.6 6e-13
seq9 73.4 8e-11
>seq40061
Length=156973
Score = 132 bits (146), Expect = 1e-28
Identities = 196/279 (70%), Gaps = 18/279 (6%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| | || ||| || |
Sbjct 102836 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 102788
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | | |||||||||| || | |||| | ||||| ||| |||||
Sbjct 102787 GC------TTCTTCTCCGAGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 102735
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 102734 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 102675
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 102674 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 102615
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || || || | || |||| |||||
Sbjct 102614 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 102576
Score = 132 bits (146), Expect = 1e-28
Identities = 196/279 (70%), Gaps = 18/279 (6%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| | || ||| || |
Sbjct 139330 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 139378
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | | |||||||||| || | |||| | ||||| ||| |||||
Sbjct 139379 GC------TTCTTCTCCGAGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 139431
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 139432 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 139491
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 139492 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 139551
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || || || | || |||| |||||
Sbjct 139552 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 139590
>seq541
Length=279719
Score = 86.0 bits (94), Expect = 1e-14
Identities = 139/199 (70%), Gaps = 1/199 (1%)
Strand=Plus/Plus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||| ||||| || | |||| | ||||| ||||||||| | | ||| |||||||
Sbjct 238044 AAAAAAAGTTCACGACCCGTGGG-CCTTCTACCTTCACGCGGCATTGCTCCGTCAGACTT 238102
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
|| || |||| ||| |||| || |||| |||| |||||||| | | ||||||||
Sbjct 238103 TCATCTATTGCACAAAATTCTCCATTGCTACCTCTTGTAGGAGTCTAGGTTATGTCTCAG 238162
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260
||||| ||||| || | ||||||| || | ||| || | | || | | || ||
Sbjct 238163 TTCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTAATTATCGTCTTGATAAGCTATT 238222
Query 261 ACCCCGCCTACTACCTAAT 279
|| |||| |||| |||||
Sbjct 238223 GCCTCGCCAACTAACTAAT 238241
>seq98
Length=870214
Score = 84.2 bits (92), Expect = 5e-14
Identities = 161/236 (68%), Gaps = 20/236 (8%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||| |||||| |||||||||||||| |||||| | || || |||
Sbjct 629765 GGCTACTGGCATGGAGTTAGCCGATGTTTATTCCTCAGACAC---------------CGT 629809
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTC-ACG 119
| | ||| ||| || | |||||||||| | | |||| | | ||| | |||| | |
Sbjct 629810 CGGTG--TTTCTTCTCTGAGAAAAGAAGTTCATGACCCGTGGGTC-TTC-TACTTCTATG 629865
Query 120 CTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTA 179
| | | ||| |||| || |||||||||| || |||| ||||||||| || | ||
Sbjct 629866 CGGCATTGCTCTGTCAGGCTTTCGTCCATTGCAGAAAATTCTCCACTGCTGCTTCGCATA 629925
Query 180 GGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTA 235
|||| ||| |||||||||||| ||| | | | || | ||||||| || | ||||
Sbjct 629926 AGAGTCTGGGCCGTGTCTCAGTCCCAGTATAGCTGATCATCCTCTCGGACCACCTA 629981
>seq1093
Length=159761
Score = 82.4 bits (90), Expect = 2e-13
Identities = 115/160 (72%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 69 TTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGC 128
|| ||| || | |||| ||||| || | |||| | ||||| ||| |||| | ||
Sbjct 20516 TTCTTCTCTGAGAAAAAAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGTGGTATTGC 20574
Query 129 TGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGG 188
| ||| || ||| |||||| || | || |||| ||||||| |||||||| |||
Sbjct 20575 TTCGTCAAGCTTTCGCCCATTGCAAAAAACTCTCCACTACTGCCTCTTGTAGGAGTCTGG 20634
Query 189 ACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228
|||||||||||| ||| ||||| || | ||||||||||
Sbjct 20635 GCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGA 20674
>seq46
Length=1555977
Score = 80.6 bits (88), Expect = 6e-13
Identities = 124/177 (70%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186
||||| || | || || |||||| |||| ||||| |||||||||| ||| | |||||
Sbjct 381710 GCTGGATCGGGCTTTCACCCATTGTCCAAGATTCCCCACTGCTGCCCCCCATGGGAGTCC 381651
Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGG 246
|| |||||||||||| | ||||||| || | | ||| | ||| |||| | |
Sbjct 381650 GGGCCGTGTCTCAGTCCTAATGTGGCTGATCAATCAAAAAGATCAGCTAAGCATCATTTG 381591
Query 247 CTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCG 303
|| ||| ||| ||| | || |||||||||| ||||| | |||| ||| ||
Sbjct 381590 CTTGGTCAGCCTTTATCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCG 381534
>seq9
Length=38056896
Score = 73.4 bits (80), Expect = 8e-11
Identities = 81/108 (75%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 169 TGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228
|||||||||||||||| |||||||||||||||| || ||||| || | ||||||| ||
Sbjct 16670480 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTCTCAGTGTGGCTGATCATCCTCTCGGA 16670421
Query 229 ACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCT 276
| |||| ||| | | || ||| || || || | || |||| ||
Sbjct 16670420 CCAGCTATTGATCATCGTCTTGGTAAGCTATTGCCTCACCAACTAGCT 16670373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068371828032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |