Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq33091 98.7 2e-18 seq13536 98.7 2e-18 seq2260 95.1 2e-17 seq1607 95.1 2e-17 seq875 95.1 2e-17 seq2908 86.0 1e-14 seq1542 77.0 5e-12 >seq33091 Length=2180 Score = 98.7 bits (108), Expect = 2e-18 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || |||| | ||||||| | | | || ||| || |||| Sbjct 1505 GTATGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGTGCTTGGTTGAAAAGCCAGT 1448 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||| |||||||| ||||||||||||||||||||||||| || | Sbjct 1447 GGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 1388 Query 121 G 121 | Sbjct 1387 G 1387 >seq13536 Length=5117 Score = 98.7 bits (108), Expect = 2e-18 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||| | |||||||| | ||| || ||| || |||| Sbjct 815 GTACGAGAGGAACTGTTGA-TTCACA-TAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 758 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||| | |||||| ||||| ||||||||||||||||||| || | Sbjct 757 GGCGCGAAGCTACCGTGTGCCGAATTATGACTGAATGCCTCTAAGTCAGAATCCAAGCTA 698 Query 121 G 121 | Sbjct 697 G 697 >seq2260 Length=73924 Score = 95.1 bits (104), Expect = 2e-17 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | |||||||| | | | || ||| || |||| Sbjct 1044 GTACGAGAGGAACCGTTGA-TTCACA-TAATTGGTCATCGTGCTTGGTTGAAAAGCCAGT 987 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||| | | ||| |||||||| |||||| |||||||||||||||||| || | Sbjct 986 GGTGCGAAGCTATCGTGTGCCGGATTATGACTGAACACCTCTAAGTCAGAATCCAAGCTA 927 Query 121 G 121 | Sbjct 926 G 926 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 |||||||||||||| || |||| | ||||||| | || || ||| || ||| | Sbjct 59943 TACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCTCTTGGTTGAAAAGCCAGCG 59886 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCA 115 ||||||||||| | ||| |||||||| ||||| ||||||||||||||||||| Sbjct 59885 ATGCGAAGCTACCGTGTGCCGGATTATGACTGAATGCCTCTAAGTCAGAATCCA 59832 Score = 77.0 bits (84), Expect = 5e-12 Identities = 91/121 (75%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || |||| | ||||||| | | || ||| || ||| Sbjct 16217 GTATGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCACACTTGGTTGAAAAGCTAGT 16160 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| | | || |||||||| ||||| ||||||||||||||||||| || | Sbjct 16159 GGCGCGAAGCTATCGTGTGTCGGATTATGACTGAATGCCTCTAAGTCAGAATCCAAGCTA 16100 Query 121 G 121 | Sbjct 16099 G 16099 >seq1607 Length=110441 Score = 95.1 bits (104), Expect = 2e-17 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| || |||| | ||||||| | ||| || ||| || ||| Sbjct 59515 GTACGAGAGGAACCATTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCTAGT 59572 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | || |||||||| ||||||||||||||||||||||||| || | Sbjct 59573 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 59632 Query 121 G 121 | Sbjct 59633 G 59633 Score = 95.1 bits (104), Expect = 2e-17 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||| || |||| | ||||||| ||||| || ||| || |||| Sbjct 109385 GTATGAGAGGAACCATTGA-TTCACAC-AATTGGTCATTGCGCTTGGTTGAAAAGCCAGT 109442 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||| | | |||| ||||||||||||||||||||||||| || | Sbjct 109443 GGCGCGAAGCTACCGTGTGCCGAAGTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 109502 Query 121 G 121 | Sbjct 109503 G 109503 Score = 89.7 bits (98), Expect = 8e-16 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | | | || ||| || |||| Sbjct 13962 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGTGCTTGGTTGAAAAGCCAGT 14019 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||| | ||| |||||||| ||||| |||||||||||| |||||| || | Sbjct 14020 GGCACGAAGCTACCGTATGCCGGATTATGACTGAATGCCTCTAAGTCAAAATCCAAGCTA 14079 Query 121 G 121 | Sbjct 14080 G 14080 >seq875 Length=163878 Score = 95.1 bits (104), Expect = 2e-17 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||| ||| || |||| | ||||||| | ||| || ||| || ||| Sbjct 142409 GTACGAGAGGAGCCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCTAGT 142466 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | || ||||||||| | ||| |||||||| ||||||||||||||||||||||||| || | Sbjct 142467 GGCGTGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 142526 Query 121 G 121 | Sbjct 142527 G 142527 >seq2908 Length=48135 Score = 86.0 bits (94), Expect = 1e-14 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||| || || |||| | ||||||| | | | || ||| || |||| Sbjct 3413 GTACTAGAGGAATCGTTGA-TTCACAC-AATTGGTCATCGTGCTTGGTTGAAAAGCCAGT 3470 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||| | ||| |||||||| ||||| ||||||||||||||||||| || | Sbjct 3471 GGCACGAAGCTACCGTATGCCGGATTATGACTGAATGCCTCTAAGTCAGAATCCAAGCTA 3530 Query 121 G 121 | Sbjct 3531 G 3531 >seq1542 Length=91076 Score = 77.0 bits (84), Expect = 5e-12 Identities = 91/121 (75%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 14964 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 14907 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | ||||||||| || ||||||| ||||| |||| |||||||||||||| || | Sbjct 14906 GGTGTGAAGCTACCGCGTGTCTGATTATGACTGAATGCCTTTAAGTCAGAATCCAAGCTA 14847 Query 121 G 121 | Sbjct 14846 G 14846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818882075904