Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 132 4e-26 >seq3 Length=60060032 Score = 132 bits (146), Expect = 4e-26 Identities = 358/545 (66%), Gaps = 6/545 (1%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||||| | || ||||||||||| | |||||||||||| | |||| || Sbjct 42480332 ATGTACAAGAAGGCCGTCGCCTCCTTCTGGACCGCCGAGGAGGTCGATCTCTCCAGCGAT 42480273 Query 61156 ATGAATGACTGGGAGCGTT---TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG 61212 | ||||| | | | | || || | || ||||| || | | Sbjct 42480272 CTCCCCCACTGGCTCCACACCCTCACCACCGACGAGCGCCACTTCATCTCCCACATCCTC 42480213 Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || ||||| ||||| || ||||| |||||| ||||| | | || ||| | Sbjct 42480212 GCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGTCCGCTTCATGTCC 42480153 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 || || || | | ||||| || |||||||||||||| || ||||| ||||| | Sbjct 42480152 GACGTCCAGATCCCCGAGGCTCGCGCCTTCTACGGCTTCCAAATCGCCATCGAGAACATT 42480093 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA 61392 ||||| ||||||||| | ||| |||| | ||||||| ||| | || ||| || Sbjct 42480092 CACTCCGAGATGTACTCCCTCCTCCTCGAATCCTACATCAAGGATCCGGACGAAAAAGAT 42480033 Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTC 61452 || | || ||| ||||||| | |||||||||| ||| || | |||||| || Sbjct 42480032 CGCCTTTTTCGCGCCGTCGAGACCGTCCCGGCGGTGACAAAGAAGGCCCAATGGGCCCTC 42479973 Query 61453 AATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 |||||| ||| | || | | || | || || | | |||||||| | || Sbjct 42479972 CGGTGGATCG--AGTCCTCCGAGT-CTTTCGCCGAGCGCCTCGTTGCATTTGCCGCCGTT 42479916 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 ||||| | || ||| ||| || || | | ||||| ||| | ||||| ||||| || Sbjct 42479915 GAGGGGATCTTCTTCTCTGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTC 42479856 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 ||||| || || |||||| ||| ||| | || || |||||||||||| | || || || Sbjct 42479855 ATGCCGGGGCTCACCTTCTCCAACGAGCTCATCTCTCGCGACGAGGGCCTCCACTGCGAC 42479796 Query 61633 TTTGC 61637 || || Sbjct 42479795 TTCGC 42479791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397373890033040