Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq40061 623 1e-173 seq14 178 2e-39 seq1 141 1e-28 seq1239 129 7e-25 seq357 102 1e-16 seq4 100 4e-16 >seq40061 Length=156973 Score = 623 bits (690), Expect = 1e-173 Identities = 740/992 (75%), Gaps = 12/992 (1%) Strand=Plus/Minus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 |||||| | ||| | ||| ||| | |||||||| || | || ||||||||||| || Sbjct 1137 TTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1078 Query 188911 ATGATCCCTACGCTTCTCG-CTGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCAC 188968 ||||||||||| ||| | | | ||||| |||| ||||| ||||||| | ||||| | Sbjct 1077 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTCATTATCGCCTTCATTGCTGCTC 1020 Query 188969 CCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACA 189028 | || ||||| |||||||| || || ||||| || ||||||| || | |||||||||| Sbjct 1019 CTCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACA 960 Query 189029 ACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCA 189088 | || ||||||||||| || | || | || || || ||| | || || || || | Sbjct 959 ATATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGA 900 Query 189089 TCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAG 189148 | |||||||| || || | ||||||||| | ||||| || ||||||| | || | | Sbjct 899 TATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTG 840 Query 189149 TCTTCCACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTT 189205 | | |||||| | | || | || || | |||||||||||||||||||||| || Sbjct 839 TTCTACACTTCTTACTTGG--TGTA-GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTT 783 Query 189206 ACCGTCTCGGTATGCGTCCTTGGATCTGCA-TTGCTTACTCTGCACCTGTTGCAGCAGCA 189264 ||| || ||||||||||||||||| ||| |||| || || || ||||||||||| || Sbjct 782 TCCGCCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCT 724 Query 189265 TCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTG 189324 | || || || || |||| ||| |||||||||| ||||||||| | ||||| || Sbjct 723 ACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTA 664 Query 189325 GGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATG 189384 || || ||| || ||||||| |||| |||| ||||| || || ||||||||||| ||| Sbjct 663 GGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATG 604 Query 189385 CACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATG 189444 || || || |||||| |||| || || ||||| ||||| || || || ||| || ||| Sbjct 603 CATCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATG 544 Query 189445 CATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAAC 189504 |||||||| | || |||||| || | | ||||||||||||| ||| || || Sbjct 543 CATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAAT 484 Query 189505 TATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATAT 189564 ||||||| || || ||||| |||||||| || || ||||| ||||||||||| ||| Sbjct 483 GCGGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTAT 424 Query 189565 TTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTC 189624 || || || | |||||||||||||| |||||||| || ||||| | || |||||| Sbjct 423 TTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTC 364 Query 189625 CTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCA 189684 | ||||| ||||| || || ||||||||||| || || | || | || || ||||| Sbjct 363 TTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCT 304 Query 189685 TTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTG 189744 |||||||| ||||| ||||| ||||| ||||| | |||| |||| ||||||||| | Sbjct 303 TTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATC 244 Query 189745 AACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGT 189804 ||||| ||||| || | |||| |||||| |||||||||||||| |||||||| ||| Sbjct 243 AACACTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 184 Query 189805 AACGCTCACAACTTCCCTCTTGATCTGGCAGC 189836 || ||||||||||||||||| || || || || Sbjct 183 AATGCTCACAACTTCCCTCTAGACCTAGCTGC 152 Score = 513 bits (568), Expect = 2e-140 Identities = 708/985 (72%), Gaps = 4/985 (0%) Strand=Plus/Plus Query 190017 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTCGCA 190076 || || || || ||||| || |||||||| || | || ||||| ||||||| |||| Sbjct 33106 GACCGTTTCGTTTTTGTAGGCTGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 33165 Query 190077 ATTGGTGGCTGGCTTACTGGCACGACGTTTGCTACAAGCTGGTACACCCACGGACTCGCA 190136 | || || ||| |||| || || || |||| || ||||| ||||| ||| | || Sbjct 33166 TTAGGAGGTTGGTTTACAGGTACAACTTTTGTAACTTCATGGTATACCCATGGATTGGCC 33225 Query 190137 AGTAGTTACCTTGAGGGTGCTAATTTTCTTACAGCGGCTGTGTCAACGCCTGCTGATGCT 190196 ||| || | || ||| ||||| | || || || || || || ||||| || | Sbjct 33226 AGTTCCTATTTGGAAGGTTGCAATTTCTTGACCGCTGCAGTTTCCACTCCTGCGAATAGT 33285 Query 190197 ATGGGTCATTCTCTTCTT-CTACTTTGGGGTCCTGAATCTCAAGGCGATTTCGTCAGGTG 190255 | | ||||| ||| || ||||| ||||| ||||| | ||||| ||||| | || Sbjct 33286 TTAGCACATTC-CTTGTTGCTACTATGGGGCCCTGAGGCACAAGGGGATTTTACTCGTTG 33344 Query 190256 GATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGG 190315 | ||| | || || || ||| ||||||| || ||||| || | ||||| ||||| || Sbjct 33345 GTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGTTTTCGGACTAATAGG 33404 Query 190316 ATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTA 190374 || ||| | ||||| || ||||| || || ||| | | | || ||||| ||||| | Sbjct 33405 TTTTATGTTACGTCAATTCGAACTTGCTCGATCTGTGCAAT-TGCGACCTTATAATGCAA 33463 Query 190375 TTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTC 190434 | || ||||||| ||| || |||||||||||| || || || || || || ||||||| Sbjct 33464 TCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGGTC 33523 Query 190435 AATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCT 190494 |||| |||||||||| ||||| || || || ||||| || || || ||| |||||| Sbjct 33524 AATCTGGTTGGTTCTTTGCGCCCAGTTTTGGCGTAGCAGCTATATTTCGATTCATCCTCT 33583 Query 190495 TCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGTTGCAGGTA 190554 |||| || || || ||||| |||||| ||||||| || || |||||||| ||||| || Sbjct 33584 TCTTCCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAG 33643 Query 190555 TCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAATACTTTGTATG 190614 | | || | || || || | || || ||||||| || ||||| |||||||| | | Sbjct 33644 TATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCG 33703 Query 190615 AAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAGGAAGAGACCT 190674 |||||||||| ||||| || || || || || | || |||| |||||||| | Sbjct 33704 AAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTT 33763 Query 190675 ATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATA 190734 |||| ||||||||||| ||||| || ||||| ||||||||||| ||||| || |||| Sbjct 33764 ATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATA 33823 Query 190735 AGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCA 190794 | | ||||| |||||||||||||| ||||| || || | ||| | |||| | | Sbjct 33824 AACGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTC 33883 Query 190795 TCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCA 190854 | || | | || || ||||| ||||| ||||| |||||||| || |||||||| ||| Sbjct 33884 TTGGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCGTTTCCCAAGAAATCC 33943 Query 190855 GAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGAATGAAG 190914 | ||||| |||||||| || || |||||||| ||||| |||||||| || || || |||| Sbjct 33944 GTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTCTTAAACGAAG 34003 Query 190915 GTCTTCGTTCATGGTTGGCACCTGTTGATCAACCCCATGAGAATTTTGTATTTCCAGAAG 190974 || ||||| | ||| |||| || ||||| || ||||| || || |||| || || | Sbjct 34004 GTATTCGTGCTTGGATGGCGGCTCAGGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 34063 Query 190975 AAGTATTGCCAAGAGGCAACGCTCT 190999 | || | || | || |||||||| Sbjct 34064 AGGTTCTACCCCGTGGAAACGCTCT 34088 >seq14 Length=24379743 Score = 178 bits (196), Expect = 2e-39 Identities = 253/356 (71%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 190371 GCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTG 190430 || ||||| ||||||| ||| || |||||||||||| | || || || || || || Sbjct 16929123 GCAATTGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTATATTCCTGATTTATCCATTG 16929182 Query 190431 GGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTC 190490 |||| ||| |||||||||| ||||| || ||||| ||| | || || | ||| || Sbjct 16929183 GGTCGATCTGGTTGGTTCTTTGCGCCCAATTTTGGTGTAGCAACTATATTTCTATTCATC 16929242 Query 190491 CTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGTTGCA 190550 || || || || | || |||| |||||| ||||||| || || |||||||| ||||| Sbjct 16929243 CTTTTTTTCCAAAGGTTTTATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCT 16929302 Query 190551 GGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAATACTTTG 190610 || | | || | || || || | || || ||||||| || ||||| |||| ||| Sbjct 16929303 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATATTTTA 16929362 Query 190611 TATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAGGAAGAG 190670 | ||||||||||| ||||| || || | || || || | || |||| |||||| Sbjct 16929363 TTCGAAGATGGTGACGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAG 16929422 Query 190671 ACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTT 190726 || ||| ||||||||| | || || ||||| |||||||||| ||||| || Sbjct 16929423 ACTTATGTAATGGTCACTACTCACTACTTTTGGTCCCAAATCTTTGAGGTTGCTTT 16929478 >seq1 Length=68435666 Score = 141 bits (156), Expect = 1e-28 Identities = 197/275 (72%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 189562 TATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTC 189621 ||||| || || | |||||| ||||| | |||||||| || | || | || ||| Sbjct 3686464 TATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATTTC 3686523 Query 189622 TTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATG 189681 ||| | |||| ||||| || || |||||||||| || || | | | || || ||| Sbjct 3686524 TTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTATG 3686583 Query 189682 GCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTT 189741 | || ||||| |||| ||||| ||||| ||||| | |||| |||| || ||||| Sbjct 3686584 ACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTGTT 3686642 Query 189742 CTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAG 189801 | || || ||| | || | |||| | ||| ||||||||||||||| |||||||| Sbjct 3686643 ATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGAA 3686702 Query 189802 CGTAACGCTCACAACTTCCCTCTTGATCTGGCAGC 189836 ||||| |||||||||||| |||| || || || || Sbjct 3686703 CGTAATGCTCACAACTTCTCTCTAGACCTAGCTGC 3686737 Score = 114 bits (126), Expect = 2e-20 Identities = 238/352 (68%), Gaps = 3/352 (1%) Strand=Plus/Plus Query 189478 GAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACG 189537 ||||||||| ||| ||||| || | ||||||| || | |||| ||| ||||| Sbjct 30150012 GAAACCACTAAAAATGAGTCTACTAATGAAGGTTACAGATTCAGTCAAGTAGACGAAACT 30150071 Query 189538 TACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTC 189597 | || || || | ||| ||||| | || || | |||||| | |||||| ||| Sbjct 30150072 CATAATATTGTAGGTGCCCATGGTTTATTTGGCAGATTTATCTCACGATATGCTAGTTTC 30150131 Query 189598 AACAACTCCCGTTCACTTCAC--TTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGT 189655 ||||| || |||| ||| || || || | ||||| |||| | || ||||||| || Sbjct 30150132 AACAATTCTTGTTC-CTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTCGGTATCTAGT 30150190 Query 189656 TTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAAT 189715 | | || | | |||| || ||| | || ||||| ||||| ||||| | ||| ||| Sbjct 30150191 TACCTGCTTTACGTATCAGTACTATGACTTTTAACCTAAATGGTTTCAATTCCAACCAAA 30150250 Query 189716 CCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTG 189775 | | | | || ||| ||| |||| | | || | | | || | |||| | || | Sbjct 30150251 CTAATGTAGACAATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTA 30150310 Query 189776 GTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGA 189827 ||| ||||||||| ||| |||| |||| ||||||||||||||||| || Sbjct 30150311 AGTTTGATATGGAAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGA 30150362 >seq1239 Length=80461 Score = 129 bits (142), Expect = 7e-25 Identities = 142/189 (75%), Gaps = 5/189 (3%) Strand=Plus/Plus Query 190364 TTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTA 190423 ||| ||||| || || ||||||| ||| || ||| |||||||| ||| || |||| || Sbjct 69230 TTATAATGCAATCGCATTCTCTGTTCCAATTGCTATTTTTGTTTCCGTATTCTTCATTTA 69289 Query 190424 CCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTCCG 190483 || ||||||||||| ||||||||||| || || ||||| ||||| || || | Sbjct 69290 TCCACTGGGTCAATCTAGTTGGTTCTTTGCACC-----CAGGTGTTGCAGCTATATTTTG 69344 Query 190484 CTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGG 190543 ||| |||||||||| || || || ||||| |||| | ||||||| || || ||| ||| Sbjct 69345 ATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGACGGG 69404 Query 190544 TGTTGCAGG 190552 ||||| || Sbjct 69405 AGTTGCCGG 69413 >seq357 Length=580603 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 190805 TGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGA 190864 ||| || ||||| ||||| ||||| |||||||| | |||||||| ||| |||||||| Sbjct 527712 TGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCATTTCCCAAGAAATCCATGCAGCAGA 527653 Query 190865 AGATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGA 190908 |||||| || || |||||||| ||||| |||||||| |||| || Sbjct 527652 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTCGA 527609 >seq4 Length=57251647 Score = 100 bits (110), Expect = 4e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 190597 TAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTA 190656 |||| |||||||| | ||||||||||| ||||| ||||| || || || | | Sbjct 3793180 TAGAAAATACTTTATTCGAAGATGGTGACGGTGCAAATACGTTCCGTGCTTTTAACCCAA 3793239 Query 190657 CACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTG 190716 | |||| |||||||| ||||| ||||||||||| |||| || ||||| |||||||||| Sbjct 3793240 CTCAAGCTGAAGAGACTTATTCAATGGTCACTGCTAACCACTTTTGGTCCCAAATCTTTG 3793299 Query 190717 GTGTTGCGTT 190726 | ||||| || Sbjct 3793300 GGGTTGCTTT 3793309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633762476514000