Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq783 86.0 3e-15 seq38 71.6 8e-11 >seq783 Length=351393 Score = 86.0 bits (94), Expect = 3e-15 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||||||||||| | ||||| | ||||||| || Sbjct 347221 GAACCCAAAAACTTTGATTTCTCGTAAGGTGTCAGTAGAGTCTTGAAAGTAACATCTGCC 347162 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 ||||| | ||||||| |||| |||| ||| | || ||||||| ||| ||||| Sbjct 347161 GATCCTTGGTCGGCAATATTTATGGTTGAGATGAGGATGGTATCTAATCATCTTC 347107 >seq38 Length=1915673 Score = 71.6 bits (78), Expect = 8e-11 Identities = 86/116 (74%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 || ||||| |||||||||||| |||| |||||| || | ||| |||||||| ||| Sbjct 1681983 AATCCAAAAACTTTGATTTCTTATAAGATGCCGACAGAACCTAAA--ATAACATCCACCG 1681926 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || | | || |||| |||| | || ||| || || | ||| |||||||||| || Sbjct 1681925 ATTCTTGATCAGCATCTTTTATGCTTGAGAGTAGGATGATATTTGATCGTCTTTGA 1681870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278330166840