Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq783 159 6e-37 seq38 150 3e-34 seq340 120 6e-25 seq1357 113 8e-23 >seq783 Length=351393 Score = 159 bits (176), Expect = 6e-37 Identities = 186/242 (77%), Gaps = 7/242 (3%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| |||||||| || |||||||| ||| ||| | |||||||||||||| Sbjct 346861 TTACTTTGAAGAAATTAGAATGCTCAAAGCAAGCCCACGCTTTGGATACATTAGCATGGG 346920 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTT-TGTTGGT-TTCTAGGACCGCCGTAATGATT 191 |||| || | |||| | ||| || || |||||| ||| || | || ||||||||| Sbjct 346921 ATAACAGCACAGGATTTT-GGTCCTTGTTGTGTTGGCATTCGAG-ATCGGAGTAATGATT 346978 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 || |||||||| |||||| | |||| || |||||||||||||||||||||||||| Sbjct 346979 AAGAGGGATAGCCGGGGGCATTCATATTTCATAGTCAGAGGTGAAATTCTTGGATTTATA 347038 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 || || ||| ||| |||||| || | ||| ||||||| |||||||| ||| |||| Sbjct 347039 AAAAACGAACCACTATGAAAGCATTTGCTAAGAATGTTTT-ATTAATCA-AGAATAAAAG 347096 Query 312 TT 313 || Sbjct 347097 TT 347098 >seq38 Length=1915673 Score = 150 bits (166), Expect = 3e-34 Identities = 182/244 (75%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129 ||| ||||||| || |||||| |||| |||||||| || ||||| | |||||| |||| Sbjct 1679938 ACTATTACTTTAAAGAAATTAAAGTGCTCAAAGCAAACCCATGCTCTGGATACATAAGCA 1679997 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||| |||| | |||||| | || | ||||| |||||| || |||| || ||||| | Sbjct 1679998 TGGGATAACATTATAGGATTT-CGATCCTATTGTGTTGGCTTTCAGGATCGGAGTAATAA 1680056 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| || | |||| | || | |||| || || ||| ||||||||||||||||| Sbjct 1680057 TTAAGAGAAACAGTCAGAGGCATTCATATTTCATAGTTGGAGTTGAAATTCTTGGATTTA 1680116 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | ||||| ||| ||| |||| || |||||||||||||| |||||| ||| ||| Sbjct 1680117 TGAAAGACAAACCACTATAAAAGTATTTGTCAAGGATGTTTTCAATAATCA-AGAATGAA 1680175 Query 310 AGTT 313 |||| Sbjct 1680176 AGTT 1680179 >seq340 Length=705485 Score = 120 bits (132), Expect = 6e-25 Identities = 184/254 (72%), Gaps = 10/254 (4%) Strand=Plus/Plus Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC---TCGAATACA 123 ||| | | ||||||| |||||||||||||| |||| ||| ||| || | |||||| Sbjct 286062 CAGTATTATTACTTT-AAAAAATTAGAGTGATCAATGCAAGCCG--GCATTTTAAATACA 286118 Query 124 TTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG 183 | |||| | |||| | | || | | |||| ||| | | || || | | || | | Sbjct 286119 TCAGCACGAGATAACATCACAGAATTT-CGGTCCTACTATATTAGTCTTTGAGATTGGAG 286177 Query 184 TAATGATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 |||||||||| ||| |||||| |||| ||| |||| || |||| ||||||||||||| Sbjct 286178 TAATGATTAAGAGGAATAGTCAAGGGGAATCA-TATTTTATAGTCAAAGGTGAAATTCTT 286236 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||| | |||| ||| || | ||||| || | |||||||||||||||||| || Sbjct 286237 GGATTTGTGAAAGATGAACCCCTACAAAAGCATTTTCTAAGGATGTTTTCATTAAT-AGA 286295 Query 303 GAACGAAAGTTAGG 316 || || |||| || Sbjct 286296 AAATGAGAGTTTGG 286309 >seq1357 Length=220353 Score = 113 bits (124), Expect = 8e-23 Identities = 173/243 (71%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATAC-ATTAGCATGGA 133 |||||||||| ||||||||||| || ||||| | ||| || | ||| |||||| Sbjct 166810 TTACTTTGAAGAAATTAGAGTGCTCGAAGCAAGAACACTCTCTAAAAATATTCGCATGGG 166869 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | | || |||| |||||| | | | || |||||||||| Sbjct 166870 ATAACATCATAGGATTT-CAGTCTTATTGTGTTGGCCTTCAAAATCGGAGTAATGATTAG 166928 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| | |||| | | || | ||| || |||||||||||||||||| | Sbjct 166929 GAGGGACAAATGGGGACATTCATGTTTCACAATCAAAGATGAAATTCTTGGATTTATGAA 166988 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||||| || |||||| || |||||||| |||| |||| ||| ||| ||||||| Sbjct 166989 AGACAAACTATTGTGAAAGCATTTGCCAAGGATATTTTTATTACTCA-AGAATGAAAGTT 167047 Query 314 AGG 316 || Sbjct 167048 GGG 167050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914955129088